Cluster: HRGMv2_0244_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0244
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0244_2 | HRGMv2_0244_2_8 | 9982 | 10218 | - | 3.D.1.6.3 |
| pfam | HRGMv2_0244_2 | HRGMv2_0244_2_9 | 10498 | 12564 | + | tRNA-synt_1 | tRNA_bind | tRNA-synt_1g | Anticodon_3 |
| pfam | HRGMv2_0244_2 | HRGMv2_0244_2_10 | 12969 | 13784 | + | CBM26 |
| CAZyme | HRGMv2_0244_2 | HRGMv2_0244_2_11 | 13794 | 17045 | + | CBM74 | GH13_28 |
Gene ID: HRGMv2_0244_2_8
Type: TC
Location: 9982 - 10218 (-)
Type: TC
Location: 9982 - 10218 (-)
Gene ID: HRGMv2_0244_2_9
Type: pfam
Location: 10498 - 12564 (+)
Type: pfam
Location: 10498 - 12564 (+)
Gene ID: HRGMv2_0244_2_10
Type: pfam
Location: 12969 - 13784 (+)
Type: pfam
Location: 12969 - 13784 (+)
Gene ID: HRGMv2_0244_2_11
Type: CAZyme
Location: 13794 - 17045 (+)
Type: CAZyme
Location: 13794 - 17045 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0244_2_11 | vegetarian > vegan | 3.23965 | 0.00759 |