Cluster: HRGMv2_0243_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0243
- CGC Family ID: CGCFAM_01486
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0243_3 | HRGMv2_0243_3_88 | 122104 | 125334 | + | 1.B.14.6.1 |
| TC | HRGMv2_0243_3 | HRGMv2_0243_3_89 | 125367 | 127391 | + | 8.A.46.1.3 |
| CAZyme | HRGMv2_0243_3 | HRGMv2_0243_3_90 | 127553 | 131053 | + | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_0243_3 | HRGMv2_0243_3_91 | 131390 | 133483 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0243_3 | HRGMv2_0243_3_92 | 133564 | 136818 | + | 1.B.14.6.1 |
| TC | HRGMv2_0243_3 | HRGMv2_0243_3_93 | 136845 | 138842 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | HRGMv2_0243_3 | HRGMv2_0243_3_94 | 138916 | 139161 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0243_3 | HRGMv2_0243_3_95 | 139272 | 143468 | + | HTH_AraC |
| CAZyme | HRGMv2_0243_3 | HRGMv2_0243_3_96 | 143687 | 145018 | - | GH28 |
Gene ID: HRGMv2_0243_3_88
Type: TC
Location: 122104 - 125334 (+)
Type: TC
Location: 122104 - 125334 (+)
Gene ID: HRGMv2_0243_3_89
Type: TC
Location: 125367 - 127391 (+)
Type: TC
Location: 125367 - 127391 (+)
Gene ID: HRGMv2_0243_3_90
Type: CAZyme
Location: 127553 - 131053 (+)
Type: CAZyme
Location: 127553 - 131053 (+)
Gene ID: HRGMv2_0243_3_91
Type:
Location: 131390 - 133483 (+)
Type:
Location: 131390 - 133483 (+)
Gene ID: HRGMv2_0243_3_92
Type: TC
Location: 133564 - 136818 (+)
Type: TC
Location: 133564 - 136818 (+)
Gene ID: HRGMv2_0243_3_93
Type: TC
Location: 136845 - 138842 (+)
Type: TC
Location: 136845 - 138842 (+)
Gene ID: HRGMv2_0243_3_94
Type:
Location: 138916 - 139161 (+)
Type:
Location: 138916 - 139161 (+)
Gene ID: HRGMv2_0243_3_95
Type: TF
Location: 139272 - 143468 (+)
Type: TF
Location: 139272 - 143468 (+)
Gene ID: HRGMv2_0243_3_96
Type: CAZyme
Location: 143687 - 145018 (-)
Type: CAZyme
Location: 143687 - 145018 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900313215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0243_3_88 | vegetarian > vegan | 2.03832 | 0.00279 |
| HRGMv2_0243_3_89 | vegetarian > vegan | 1.85977 | 0.00279 |
| HRGMv2_0243_3_90 | vegetarian > vegan | 2.14457 | 0.00279 |
| HRGMv2_0243_3_91 | vegetarian > vegan | 2.11266 | 0.00279 |
| HRGMv2_0243_3_92 | vegetarian > vegan | 1.30282 | 0.00279 |
| HRGMv2_0243_3_93 | vegetarian > vegan | 2.01513 | 0.00279 |
| HRGMv2_0243_3_94 | vegetarian > vegan | 1.99073 | 0.00279 |
| HRGMv2_0243_3_95 | vegetarian > vegan | 2.20240 | 0.00279 |
| HRGMv2_0243_3_96 | vegetarian > vegan | 2.21305 | 0.00279 |