Cluster: HRGMv2_0243_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate: alpha-mannan
- Genome ID: HRGMv2_0243
- CGC Family ID: CGCFAM_02279
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0243_2 | HRGMv2_0243_2_71 | 87892 | 92121 | - | CBM32 | GH85 |
| CAZyme | HRGMv2_0243_2 | HRGMv2_0243_2_72 | 92633 | 93634 | - | GH130_2 |
| CAZyme | HRGMv2_0243_2 | HRGMv2_0243_2_73 | 93660 | 95147 | - | GH125 |
| CAZyme | HRGMv2_0243_2 | HRGMv2_0243_2_74 | 95192 | 97363 | - | GH92 |
| CAZyme | HRGMv2_0243_2 | HRGMv2_0243_2_75 | 97396 | 99657 | - | GH92 |
| TC | HRGMv2_0243_2 | HRGMv2_0243_2_76 | 99696 | 101537 | - | 8.A.46.2.2 |
| TC | HRGMv2_0243_2 | HRGMv2_0243_2_77 | 101572 | 105054 | - | 1.B.14.6.2 |
Gene ID: HRGMv2_0243_2_71
Type: CAZyme
Location: 87892 - 92121 (-)
Type: CAZyme
Location: 87892 - 92121 (-)
Gene ID: HRGMv2_0243_2_72
Type: CAZyme
Location: 92633 - 93634 (-)
Type: CAZyme
Location: 92633 - 93634 (-)
Gene ID: HRGMv2_0243_2_73
Type: CAZyme
Location: 93660 - 95147 (-)
Type: CAZyme
Location: 93660 - 95147 (-)
Gene ID: HRGMv2_0243_2_74
Type: CAZyme
Location: 95192 - 97363 (-)
Type: CAZyme
Location: 95192 - 97363 (-)
Gene ID: HRGMv2_0243_2_75
Type: CAZyme
Location: 97396 - 99657 (-)
Type: CAZyme
Location: 97396 - 99657 (-)
Gene ID: HRGMv2_0243_2_76
Type: TC
Location: 99696 - 101537 (-)
Type: TC
Location: 99696 - 101537 (-)
Gene ID: HRGMv2_0243_2_77
Type: TC
Location: 101572 - 105054 (-)
Type: TC
Location: 101572 - 105054 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900313215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0243_2_72 | vegetarian > omnivore | 2.50718 | 0.02914 |
| HRGMv2_0243_2_73 | vegetarian > omnivore | 1.22456 | 0.02914 |
| HRGMv2_0243_2_74 | vegetarian > omnivore | 1.10252 | 0.02914 |
| HRGMv2_0243_2_76 | vegetarian > omnivore | 2.80414 | 0.02914 |
| HRGMv2_0243_2_77 | vegetarian > omnivore | 2.76574 | 0.02914 |