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Cluster: HRGMv2_0243_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0243_34 HRGMv2_0243_34_2 598 966 - 2.A.7.34.3
pfam HRGMv2_0243_34 HRGMv2_0243_34_3 1043 3544 - DEAD | Helicase_C | HA2_N | ResIII | HrpB_C | CON_HrpB
NULL(UNKNOWN) HRGMv2_0243_34 HRGMv2_0243_34_4 3574 4302 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0243_34 HRGMv2_0243_34_5 4401 5579 - GT2
pfam HRGMv2_0243_34 HRGMv2_0243_34_6 5647 6804 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
pfam HRGMv2_0243_34 HRGMv2_0243_34_7 6945 8264 - AA_kinase | ACT_9
TC HRGMv2_0243_34 HRGMv2_0243_34_8 8352 9068 - 3.A.1.140.1
Gene ID: HRGMv2_0243_34_2
Type: TC
Location: 598 - 966 (-)
Gene ID: HRGMv2_0243_34_3
Type: pfam
Location: 1043 - 3544 (-)
Gene ID: HRGMv2_0243_34_4
Type:
Location: 3574 - 4302 (-)
Gene ID: HRGMv2_0243_34_5
Type: CAZyme
Location: 4401 - 5579 (-)
Gene ID: HRGMv2_0243_34_6
Type: pfam
Location: 5647 - 6804 (-)
Gene ID: HRGMv2_0243_34_7
Type: pfam
Location: 6945 - 8264 (-)
Gene ID: HRGMv2_0243_34_8
Type: TC
Location: 8352 - 9068 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0243_34_3 vegetarian > vegan 2.93629 0.00279
HRGMv2_0243_34_4 vegetarian > vegan 2.61013 0.00279
HRGMv2_0243_34_5 vegetarian > vegan 2.26160 0.00279

🧭 Explore Read Mapping of CGC

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