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Cluster: HRGMv2_0243_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0243_12 HRGMv2_0243_12_32 31415 32404 - CE8
STP HRGMv2_0243_12 HRGMv2_0243_12_33 32460 34748 - HD
CAZyme HRGMv2_0243_12 HRGMv2_0243_12_34 34814 36175 - GH23
pfam HRGMv2_0243_12 HRGMv2_0243_12_35 36237 36965 - DUF5683
pfam HRGMv2_0243_12 HRGMv2_0243_12_36 36970 37881 - ParBc | HTH_24 | HTH_ParB | ParB_dimer
TC HRGMv2_0243_12 HRGMv2_0243_12_37 37932 38696 - 8.A.3.2.3
pfam HRGMv2_0243_12 HRGMv2_0243_12_38 38818 39612 + SurE
CAZyme HRGMv2_0243_12 HRGMv2_0243_12_39 39635 40942 + GT19
pfam HRGMv2_0243_12 HRGMv2_0243_12_40 41047 41916 - CTP_transf_1
TC HRGMv2_0243_12 HRGMv2_0243_12_41 41932 44031 - 3.A.25.1.1
Gene ID: HRGMv2_0243_12_32
Type: CAZyme
Location: 31415 - 32404 (-)
Gene ID: HRGMv2_0243_12_33
Type: STP
Location: 32460 - 34748 (-)
Gene ID: HRGMv2_0243_12_34
Type: CAZyme
Location: 34814 - 36175 (-)
Gene ID: HRGMv2_0243_12_35
Type: pfam
Location: 36237 - 36965 (-)
Gene ID: HRGMv2_0243_12_36
Type: pfam
Location: 36970 - 37881 (-)
Gene ID: HRGMv2_0243_12_37
Type: TC
Location: 37932 - 38696 (-)
Gene ID: HRGMv2_0243_12_38
Type: pfam
Location: 38818 - 39612 (+)
Gene ID: HRGMv2_0243_12_39
Type: CAZyme
Location: 39635 - 40942 (+)
Gene ID: HRGMv2_0243_12_40
Type: pfam
Location: 41047 - 41916 (-)
Gene ID: HRGMv2_0243_12_41
Type: TC
Location: 41932 - 44031 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0243_12_34 vegetarian > vegan 1.16544 0.00279

🧭 Explore Read Mapping of CGC

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