dbCAN Logo

Cluster: HRGMv2_0243_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0243_10 HRGMv2_0243_10_43 48383 49201 - 3.A.1.132.6
TC HRGMv2_0243_10 HRGMv2_0243_10_44 49689 50345 - 1.C.113.1.3
peptidase HRGMv2_0243_10 HRGMv2_0243_10_45 51260 52252 - U32.UPW
NULL(UNKNOWN) HRGMv2_0243_10 HRGMv2_0243_10_46 52695 52820 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0243_10 HRGMv2_0243_10_47 53089 54171 - GT9
pfam HRGMv2_0243_10 HRGMv2_0243_10_48 54375 54980 - DUF4254
TC HRGMv2_0243_10 HRGMv2_0243_10_49 55206 55442 + 3.D.1.6.3
Gene ID: HRGMv2_0243_10_43
Type: TC
Location: 48383 - 49201 (-)
Gene ID: HRGMv2_0243_10_44
Type: TC
Location: 49689 - 50345 (-)
Gene ID: HRGMv2_0243_10_45
Type: peptidase
Location: 51260 - 52252 (-)
Gene ID: HRGMv2_0243_10_46
Type:
Location: 52695 - 52820 (-)
Gene ID: HRGMv2_0243_10_47
Type: CAZyme
Location: 53089 - 54171 (-)
Gene ID: HRGMv2_0243_10_48
Type: pfam
Location: 54375 - 54980 (-)
Gene ID: HRGMv2_0243_10_49
Type: TC
Location: 55206 - 55442 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0243_10_44 vegetarian > vegan 1.29186 0.00279
HRGMv2_0243_10_46 vegetarian > vegan 1.52757 0.00279
HRGMv2_0243_10_47 vegetarian > vegan 1.66375 0.00279

🧭 Explore Read Mapping of CGC

← Back to Cluster List