Cluster: HRGMv2_0243_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0243
- CGC Family ID: CGCFAM_00612
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0243_8 | HRGMv2_0243_8_22 | 26368 | 26715 | + | 1.E.34.4.2 |
| NULL(UNKNOWN) | HRGMv2_0243_8 | HRGMv2_0243_8_23 | 26819 | 27079 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0243_8 | HRGMv2_0243_8_24 | 27362 | 29887 | - | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| CAZyme | HRGMv2_0243_8 | HRGMv2_0243_8_25 | 29909 | 30610 | - | GT51 |
| TC | HRGMv2_0243_8 | HRGMv2_0243_8_26 | 30705 | 31400 | - | 9.B.186.1.3 |
Gene ID: HRGMv2_0243_8_22
Type: TC
Location: 26368 - 26715 (+)
Type: TC
Location: 26368 - 26715 (+)
Gene ID: HRGMv2_0243_8_23
Type:
Location: 26819 - 27079 (+)
Type:
Location: 26819 - 27079 (+)
Gene ID: HRGMv2_0243_8_24
Type: pfam
Location: 27362 - 29887 (-)
Type: pfam
Location: 27362 - 29887 (-)
Gene ID: HRGMv2_0243_8_25
Type: CAZyme
Location: 29909 - 30610 (-)
Type: CAZyme
Location: 29909 - 30610 (-)
Gene ID: HRGMv2_0243_8_26
Type: TC
Location: 30705 - 31400 (-)
Type: TC
Location: 30705 - 31400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900313215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0243_8_22 | vegetarian > vegan | 1.61111 | 0.00279 |
| HRGMv2_0243_8_23 | vegetarian > vegan | 1.77651 | 0.00279 |
| HRGMv2_0243_8_24 | vegetarian > vegan | 1.09565 | 0.00279 |
| HRGMv2_0243_8_26 | vegetarian > vegan | 1.22556 | 0.00279 |