Cluster: HRGMv2_0243_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0243
- CGC Family ID: CGCFAM_00513
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0243_7 | HRGMv2_0243_7_36 | 37163 | 38086 | - | 2.A.4.7.2 |
| CAZyme | HRGMv2_0243_7 | HRGMv2_0243_7_37 | 38195 | 39676 | - | GH140 |
| NULL(UNKNOWN) | HRGMv2_0243_7 | HRGMv2_0243_7_38 | 39728 | 40021 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0243_7 | HRGMv2_0243_7_39 | 40062 | 42395 | - | GH3 |
| NULL(UNKNOWN) | HRGMv2_0243_7 | HRGMv2_0243_7_40 | 42448 | 43461 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0243_7 | HRGMv2_0243_7_41 | 43522 | 45297 | - | 8.A.46.2.2 |
| TC | HRGMv2_0243_7 | HRGMv2_0243_7_42 | 45357 | 48533 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_0243_7 | HRGMv2_0243_7_43 | 48561 | 49787 | - | GH5_4 |
| TF | HRGMv2_0243_7 | HRGMv2_0243_7_44 | 49968 | 54059 | - | HTH_AraC |
| CAZyme | HRGMv2_0243_7 | HRGMv2_0243_7_45 | 54194 | 54970 | - | GT2 |
| CAZyme | HRGMv2_0243_7 | HRGMv2_0243_7_46 | 54967 | 56241 | - | GT4 |
| pfam | HRGMv2_0243_7 | HRGMv2_0243_7_47 | 56698 | 57177 | - | YgbB |
| TC | HRGMv2_0243_7 | HRGMv2_0243_7_48 | 57189 | 58370 | - | 1.B.57.4.6 |
Gene ID: HRGMv2_0243_7_36
Type: TC
Location: 37163 - 38086 (-)
Type: TC
Location: 37163 - 38086 (-)
Gene ID: HRGMv2_0243_7_37
Type: CAZyme
Location: 38195 - 39676 (-)
Type: CAZyme
Location: 38195 - 39676 (-)
Gene ID: HRGMv2_0243_7_38
Type:
Location: 39728 - 40021 (-)
Type:
Location: 39728 - 40021 (-)
Gene ID: HRGMv2_0243_7_39
Type: CAZyme
Location: 40062 - 42395 (-)
Type: CAZyme
Location: 40062 - 42395 (-)
Gene ID: HRGMv2_0243_7_40
Type:
Location: 42448 - 43461 (-)
Type:
Location: 42448 - 43461 (-)
Gene ID: HRGMv2_0243_7_41
Type: TC
Location: 43522 - 45297 (-)
Type: TC
Location: 43522 - 45297 (-)
Gene ID: HRGMv2_0243_7_42
Type: TC
Location: 45357 - 48533 (-)
Type: TC
Location: 45357 - 48533 (-)
Gene ID: HRGMv2_0243_7_43
Type: CAZyme
Location: 48561 - 49787 (-)
Type: CAZyme
Location: 48561 - 49787 (-)
Gene ID: HRGMv2_0243_7_44
Type: TF
Location: 49968 - 54059 (-)
Type: TF
Location: 49968 - 54059 (-)
Gene ID: HRGMv2_0243_7_45
Type: CAZyme
Location: 54194 - 54970 (-)
Type: CAZyme
Location: 54194 - 54970 (-)
Gene ID: HRGMv2_0243_7_46
Type: CAZyme
Location: 54967 - 56241 (-)
Type: CAZyme
Location: 54967 - 56241 (-)
Gene ID: HRGMv2_0243_7_47
Type: pfam
Location: 56698 - 57177 (-)
Type: pfam
Location: 56698 - 57177 (-)
Gene ID: HRGMv2_0243_7_48
Type: TC
Location: 57189 - 58370 (-)
Type: TC
Location: 57189 - 58370 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900313215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.