Cluster: HRGMv2_0223_CGC9
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate: xylan/beta-glucan
- Genome ID: HRGMv2_0223
- CGC Family ID: CGCFAM_00116
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_10 | 8262 | 8834 | - | 2.A.51.1.6 |
| pfam | HRGMv2_0223_10 | HRGMv2_0223_10_11 | 8890 | 9423 | - | Chromate_transp |
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_12 | 9646 | 10872 | + | 2.A.6.1.5 |
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_13 | 10881 | 11966 | + | 2.A.6.1.8 |
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_14 | 11959 | 15063 | + | 2.A.6.1.17 |
| NULL(UNKNOWN) | HRGMv2_0223_10 | HRGMv2_0223_10_15 | 15108 | 15464 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0223_10 | HRGMv2_0223_10_16 | 15716 | 19633 | + | HTH_AraC |
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_17 | 20561 | 23653 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0223_10 | HRGMv2_0223_10_18 | 23701 | 25578 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0223_10 | HRGMv2_0223_10_19 | 25624 | 28443 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0223_10 | HRGMv2_0223_10_20 | 28467 | 30239 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0223_10 | HRGMv2_0223_10_21 | 30391 | 31374 | + | BT_3987-like_N | DUF5627 |
| CAZyme | HRGMv2_0223_10 | HRGMv2_0223_10_22 | 31488 | 33188 | + | GH10 |
| CAZyme | HRGMv2_0223_10 | HRGMv2_0223_10_23 | 33366 | 36359 | + | GH98 |
Gene ID: HRGMv2_0223_10_10
Type: TC
Location: 8262 - 8834 (-)
Type: TC
Location: 8262 - 8834 (-)
Gene ID: HRGMv2_0223_10_11
Type: pfam
Location: 8890 - 9423 (-)
Type: pfam
Location: 8890 - 9423 (-)
Gene ID: HRGMv2_0223_10_12
Type: TC
Location: 9646 - 10872 (+)
Type: TC
Location: 9646 - 10872 (+)
Gene ID: HRGMv2_0223_10_13
Type: TC
Location: 10881 - 11966 (+)
Type: TC
Location: 10881 - 11966 (+)
Gene ID: HRGMv2_0223_10_14
Type: TC
Location: 11959 - 15063 (+)
Type: TC
Location: 11959 - 15063 (+)
Gene ID: HRGMv2_0223_10_15
Type:
Location: 15108 - 15464 (+)
Type:
Location: 15108 - 15464 (+)
Gene ID: HRGMv2_0223_10_16
Type: TF
Location: 15716 - 19633 (+)
Type: TF
Location: 15716 - 19633 (+)
Gene ID: HRGMv2_0223_10_17
Type: TC
Location: 20561 - 23653 (+)
Type: TC
Location: 20561 - 23653 (+)
Gene ID: HRGMv2_0223_10_18
Type: pfam
Location: 23701 - 25578 (+)
Type: pfam
Location: 23701 - 25578 (+)
Gene ID: HRGMv2_0223_10_19
Type: TC
Location: 25624 - 28443 (+)
Type: TC
Location: 25624 - 28443 (+)
Gene ID: HRGMv2_0223_10_20
Type: pfam
Location: 28467 - 30239 (+)
Type: pfam
Location: 28467 - 30239 (+)
Gene ID: HRGMv2_0223_10_21
Type: pfam
Location: 30391 - 31374 (+)
Type: pfam
Location: 30391 - 31374 (+)
Gene ID: HRGMv2_0223_10_22
Type: CAZyme
Location: 31488 - 33188 (+)
Type: CAZyme
Location: 31488 - 33188 (+)
Gene ID: HRGMv2_0223_10_23
Type: CAZyme
Location: 33366 - 36359 (+)
Type: CAZyme
Location: 33366 - 36359 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella absiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.