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Cluster: HRGMv2_0223_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0223_9 HRGMv2_0223_9_14 11599 13185 + 3.A.2.1.3
TC HRGMv2_0223_9 HRGMv2_0223_9_15 13198 14169 + 3.A.2.1.1
NULL(UNKNOWN) HRGMv2_0223_9 HRGMv2_0223_9_16 14303 14716 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0223_9 HRGMv2_0223_9_17 14877 16556 + GT3
CAZyme HRGMv2_0223_9 HRGMv2_0223_9_18 16613 19174 + GT35
NULL(UNKNOWN) HRGMv2_0223_9 HRGMv2_0223_9_19 20457 21005 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0223_9 HRGMv2_0223_9_20 21084 21479 + SSB
TC HRGMv2_0223_9 HRGMv2_0223_9_21 21494 22825 + 9.A.40.1.1
Gene ID: HRGMv2_0223_9_14
Type: TC
Location: 11599 - 13185 (+)
Gene ID: HRGMv2_0223_9_15
Type: TC
Location: 13198 - 14169 (+)
Gene ID: HRGMv2_0223_9_16
Type:
Location: 14303 - 14716 (-)
Gene ID: HRGMv2_0223_9_17
Type: CAZyme
Location: 14877 - 16556 (+)
Gene ID: HRGMv2_0223_9_18
Type: CAZyme
Location: 16613 - 19174 (+)
Gene ID: HRGMv2_0223_9_19
Type:
Location: 20457 - 21005 (+)
Gene ID: HRGMv2_0223_9_20
Type: pfam
Location: 21084 - 21479 (+)
Gene ID: HRGMv2_0223_9_21
Type: TC
Location: 21494 - 22825 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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