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Cluster: HRGMv2_0223_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0223_76 HRGMv2_0223_76_10 8741 11923 + 1.B.14.6.3
pfam HRGMv2_0223_76 HRGMv2_0223_76_11 11947 12708 + GDPD
pfam HRGMv2_0223_76 HRGMv2_0223_76_12 13197 14690 - Polysacc_synt
TC HRGMv2_0223_76 HRGMv2_0223_76_13 14740 15966 - 9.B.156.3.1
TC HRGMv2_0223_76 HRGMv2_0223_76_14 16188 17573 + 9.B.18.1.1
CAZyme HRGMv2_0223_76 HRGMv2_0223_76_15 17670 19127 - CE20
CAZyme HRGMv2_0223_76 HRGMv2_0223_76_16 19803 21086 + CE7
CAZyme HRGMv2_0223_76 HRGMv2_0223_76_17 21124 22179 + GH26
CAZyme HRGMv2_0223_76 HRGMv2_0223_76_18 22290 23459 + GH130_1
TC HRGMv2_0223_76 HRGMv2_0223_76_19 23531 24880 + 2.A.2.3.4
Gene ID: HRGMv2_0223_76_10
Type: TC
Location: 8741 - 11923 (+)
Gene ID: HRGMv2_0223_76_11
Type: pfam
Location: 11947 - 12708 (+)
Gene ID: HRGMv2_0223_76_12
Type: pfam
Location: 13197 - 14690 (-)
Gene ID: HRGMv2_0223_76_13
Type: TC
Location: 14740 - 15966 (-)
Gene ID: HRGMv2_0223_76_14
Type: TC
Location: 16188 - 17573 (+)
Gene ID: HRGMv2_0223_76_15
Type: CAZyme
Location: 17670 - 19127 (-)
Gene ID: HRGMv2_0223_76_16
Type: CAZyme
Location: 19803 - 21086 (+)
Gene ID: HRGMv2_0223_76_17
Type: CAZyme
Location: 21124 - 22179 (+)
Gene ID: HRGMv2_0223_76_18
Type: CAZyme
Location: 22290 - 23459 (+)
Gene ID: HRGMv2_0223_76_19
Type: TC
Location: 23531 - 24880 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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