Cluster: HRGMv2_0223_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0223
- CGC Family ID: CGCFAM_01143
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0223_19 | HRGMv2_0223_19_46 | 54503 | 55630 | + | GT2 |
| pfam | HRGMv2_0223_19 | HRGMv2_0223_19_47 | 55674 | 56906 | + | Phosphodiest |
| pfam | HRGMv2_0223_19 | HRGMv2_0223_19_48 | 56887 | 57573 | + | RadC | UPF0758_N |
| CAZyme | HRGMv2_0223_19 | HRGMv2_0223_19_49 | 57715 | 59070 | + | GH28 |
| TC | HRGMv2_0223_19 | HRGMv2_0223_19_50 | 59151 | 62144 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0223_19 | HRGMv2_0223_19_51 | 62181 | 63782 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0223_19 | HRGMv2_0223_19_52 | 64478 | 66943 | + | GH92 |
Gene ID: HRGMv2_0223_19_46
Type: CAZyme
Location: 54503 - 55630 (+)
Type: CAZyme
Location: 54503 - 55630 (+)
Gene ID: HRGMv2_0223_19_47
Type: pfam
Location: 55674 - 56906 (+)
Type: pfam
Location: 55674 - 56906 (+)
Gene ID: HRGMv2_0223_19_48
Type: pfam
Location: 56887 - 57573 (+)
Type: pfam
Location: 56887 - 57573 (+)
Gene ID: HRGMv2_0223_19_49
Type: CAZyme
Location: 57715 - 59070 (+)
Type: CAZyme
Location: 57715 - 59070 (+)
Gene ID: HRGMv2_0223_19_50
Type: TC
Location: 59151 - 62144 (+)
Type: TC
Location: 59151 - 62144 (+)
Gene ID: HRGMv2_0223_19_51
Type: pfam
Location: 62181 - 63782 (+)
Type: pfam
Location: 62181 - 63782 (+)
Gene ID: HRGMv2_0223_19_52
Type: CAZyme
Location: 64478 - 66943 (+)
Type: CAZyme
Location: 64478 - 66943 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella absiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.