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Cluster: HRGMv2_0223_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0223_2 HRGMv2_0223_2_2 2843 5989 + 1.B.14.6.1
pfam HRGMv2_0223_2 HRGMv2_0223_2_3 6006 7745 + SusD_RagB | SusD-like_3
pfam HRGMv2_0223_2 HRGMv2_0223_2_4 7739 9136 + DUF4960 | DUF5018
CAZyme HRGMv2_0223_2 HRGMv2_0223_2_5 9148 10737 + GH32
CAZyme HRGMv2_0223_2 HRGMv2_0223_2_6 10752 12479 + GH32
peptidase HRGMv2_0223_2 HRGMv2_0223_2_7 12593 15472 - M16.UPW
TC HRGMv2_0223_2 HRGMv2_0223_2_8 15672 16388 + 1.A.14.2.2
pfam HRGMv2_0223_2 HRGMv2_0223_2_9 16727 17614 + Fic
CAZyme HRGMv2_0223_2 HRGMv2_0223_2_10 17686 19761 - GH92
Gene ID: HRGMv2_0223_2_2
Type: TC
Location: 2843 - 5989 (+)
Gene ID: HRGMv2_0223_2_3
Type: pfam
Location: 6006 - 7745 (+)
Gene ID: HRGMv2_0223_2_4
Type: pfam
Location: 7739 - 9136 (+)
Gene ID: HRGMv2_0223_2_5
Type: CAZyme
Location: 9148 - 10737 (+)
Gene ID: HRGMv2_0223_2_6
Type: CAZyme
Location: 10752 - 12479 (+)
Gene ID: HRGMv2_0223_2_7
Type: peptidase
Location: 12593 - 15472 (-)
Gene ID: HRGMv2_0223_2_8
Type: TC
Location: 15672 - 16388 (+)
Gene ID: HRGMv2_0223_2_9
Type: pfam
Location: 16727 - 17614 (+)
Gene ID: HRGMv2_0223_2_10
Type: CAZyme
Location: 17686 - 19761 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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