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Cluster: HRGMv2_0222_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0222_67 HRGMv2_0222_67_5 1944 3884 - 1.B.14.4.3
TC HRGMv2_0222_67 HRGMv2_0222_67_6 4152 4817 - 5.A.3.1.2
pfam HRGMv2_0222_67 HRGMv2_0222_67_7 4830 5333 - Nitrate_red_del
TC HRGMv2_0222_67 HRGMv2_0222_67_8 5349 6860 - 5.A.3.1.2
TC HRGMv2_0222_67 HRGMv2_0222_67_9 6862 10554 - 5.A.3.1.1
TC HRGMv2_0222_67 HRGMv2_0222_67_10 10575 11867 - 2.A.1.8.15
pfam HRGMv2_0222_67 HRGMv2_0222_67_11 11883 12563 - NTP_transf_3
NULL(UNKNOWN) HRGMv2_0222_67 HRGMv2_0222_67_12 12576 13037 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0222_67 HRGMv2_0222_67_13 13413 16070 + GH3
Gene ID: HRGMv2_0222_67_5
Type: TC
Location: 1944 - 3884 (-)
Gene ID: HRGMv2_0222_67_6
Type: TC
Location: 4152 - 4817 (-)
Gene ID: HRGMv2_0222_67_7
Type: pfam
Location: 4830 - 5333 (-)
Gene ID: HRGMv2_0222_67_8
Type: TC
Location: 5349 - 6860 (-)
Gene ID: HRGMv2_0222_67_9
Type: TC
Location: 6862 - 10554 (-)
Gene ID: HRGMv2_0222_67_10
Type: TC
Location: 10575 - 11867 (-)
Gene ID: HRGMv2_0222_67_11
Type: pfam
Location: 11883 - 12563 (-)
Gene ID: HRGMv2_0222_67_12
Type:
Location: 12576 - 13037 (-)
Gene ID: HRGMv2_0222_67_13
Type: CAZyme
Location: 13413 - 16070 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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