Cluster: HRGMv2_0222_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0222
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0222_28 | HRGMv2_0222_28_11 | 13456 | 14898 | - | GH43_7 |
| CAZyme | HRGMv2_0222_28 | HRGMv2_0222_28_12 | 14910 | 16019 | - | CBM6 |
| pfam | HRGMv2_0222_28 | HRGMv2_0222_28_13 | 16086 | 17909 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0222_28 | HRGMv2_0222_28_14 | 17930 | 21040 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0222_28_11
Type: CAZyme
Location: 13456 - 14898 (-)
Type: CAZyme
Location: 13456 - 14898 (-)
Gene ID: HRGMv2_0222_28_12
Type: CAZyme
Location: 14910 - 16019 (-)
Type: CAZyme
Location: 14910 - 16019 (-)
Gene ID: HRGMv2_0222_28_13
Type: pfam
Location: 16086 - 17909 (-)
Type: pfam
Location: 16086 - 17909 (-)
Gene ID: HRGMv2_0222_28_14
Type: TC
Location: 17930 - 21040 (-)
Type: TC
Location: 17930 - 21040 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp945873145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.