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Cluster: HRGMv2_0222_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0222_19 HRGMv2_0222_19_7 4660 5721 + GT2
pfam HRGMv2_0222_19 HRGMv2_0222_19_8 5765 6997 + Phosphodiest
pfam HRGMv2_0222_19 HRGMv2_0222_19_9 6978 7652 + RadC | UPF0758_N
CAZyme HRGMv2_0222_19 HRGMv2_0222_19_10 7713 9146 + GH28
TC HRGMv2_0222_19 HRGMv2_0222_19_11 9227 12223 + 1.B.14.6.1
pfam HRGMv2_0222_19 HRGMv2_0222_19_12 12235 13872 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0222_19 HRGMv2_0222_19_13 13965 16154 + GH28
CAZyme HRGMv2_0222_19 HRGMv2_0222_19_14 16192 18648 + GH92
pfam HRGMv2_0222_19 HRGMv2_0222_19_15 18689 19249 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
CAZyme HRGMv2_0222_19 HRGMv2_0222_19_16 19499 22780 + GH92
Gene ID: HRGMv2_0222_19_7
Type: CAZyme
Location: 4660 - 5721 (+)
Gene ID: HRGMv2_0222_19_8
Type: pfam
Location: 5765 - 6997 (+)
Gene ID: HRGMv2_0222_19_9
Type: pfam
Location: 6978 - 7652 (+)
Gene ID: HRGMv2_0222_19_10
Type: CAZyme
Location: 7713 - 9146 (+)
Gene ID: HRGMv2_0222_19_11
Type: TC
Location: 9227 - 12223 (+)
Gene ID: HRGMv2_0222_19_12
Type: pfam
Location: 12235 - 13872 (+)
Gene ID: HRGMv2_0222_19_13
Type: CAZyme
Location: 13965 - 16154 (+)
Gene ID: HRGMv2_0222_19_14
Type: CAZyme
Location: 16192 - 18648 (+)
Gene ID: HRGMv2_0222_19_15
Type: pfam
Location: 18689 - 19249 (-)
Gene ID: HRGMv2_0222_19_16
Type: CAZyme
Location: 19499 - 22780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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