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Cluster: HRGMv2_0222_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0222_1 HRGMv2_0222_1_11 11670 12902 - 9.B.156.3.1
NULL(UNKNOWN) HRGMv2_0222_1 HRGMv2_0222_1_12 13166 13618 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0222_1 HRGMv2_0222_1_13 13566 14639 + DDE_Tnp_ISL3
TC HRGMv2_0222_1 HRGMv2_0222_1_14 14701 16122 + 9.B.18.1.1
CAZyme HRGMv2_0222_1 HRGMv2_0222_1_15 16246 17703 - CE20
CAZyme HRGMv2_0222_1 HRGMv2_0222_1_16 18381 19664 + CE7
CAZyme HRGMv2_0222_1 HRGMv2_0222_1_17 19702 20757 + GH26
CAZyme HRGMv2_0222_1 HRGMv2_0222_1_18 20868 22037 + GH130_1
TC HRGMv2_0222_1 HRGMv2_0222_1_19 22109 23458 + 2.A.2.3.4
Gene ID: HRGMv2_0222_1_11
Type: TC
Location: 11670 - 12902 (-)
Gene ID: HRGMv2_0222_1_12
Type:
Location: 13166 - 13618 (+)
Gene ID: HRGMv2_0222_1_13
Type: pfam
Location: 13566 - 14639 (+)
Gene ID: HRGMv2_0222_1_14
Type: TC
Location: 14701 - 16122 (+)
Gene ID: HRGMv2_0222_1_15
Type: CAZyme
Location: 16246 - 17703 (-)
Gene ID: HRGMv2_0222_1_16
Type: CAZyme
Location: 18381 - 19664 (+)
Gene ID: HRGMv2_0222_1_17
Type: CAZyme
Location: 19702 - 20757 (+)
Gene ID: HRGMv2_0222_1_18
Type: CAZyme
Location: 20868 - 22037 (+)
Gene ID: HRGMv2_0222_1_19
Type: TC
Location: 22109 - 23458 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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