dbCAN Logo

Cluster: HRGMv2_0218_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_6 HRGMv2_0218_6_24 32697 34625 + GH32
pfam HRGMv2_0218_6 HRGMv2_0218_6_25 34751 36517 + PDDEXK_9 | AAA-ATPase_like
TF HRGMv2_0218_6 HRGMv2_0218_6_26 36523 38028 + HTH_AraC
TC HRGMv2_0218_6 HRGMv2_0218_6_27 38209 41322 + 1.B.14.6.1
pfam HRGMv2_0218_6 HRGMv2_0218_6_28 41353 43089 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0218_6 HRGMv2_0218_6_29 43128 44846 + GH32
NULL(UNKNOWN) HRGMv2_0218_6 HRGMv2_0218_6_30 44920 45018 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0218_6 HRGMv2_0218_6_31 45011 46162 + 2.A.1.7.17
Gene ID: HRGMv2_0218_6_24
Type: CAZyme
Location: 32697 - 34625 (+)
Gene ID: HRGMv2_0218_6_25
Type: pfam
Location: 34751 - 36517 (+)
Gene ID: HRGMv2_0218_6_26
Type: TF
Location: 36523 - 38028 (+)
Gene ID: HRGMv2_0218_6_27
Type: TC
Location: 38209 - 41322 (+)
Gene ID: HRGMv2_0218_6_28
Type: pfam
Location: 41353 - 43089 (+)
Gene ID: HRGMv2_0218_6_29
Type: CAZyme
Location: 43128 - 44846 (+)
Gene ID: HRGMv2_0218_6_30
Type:
Location: 44920 - 45018 (+)
Gene ID: HRGMv2_0218_6_31
Type: TC
Location: 45011 - 46162 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_6_26 vegetarian > omnivore 1.30310 0.00629

🧭 Explore Read Mapping of CGC

← Back to Cluster List