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Cluster: HRGMv2_0218_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_5 HRGMv2_0218_5_1 1021 3024 - GH67
TF HRGMv2_0218_5 HRGMv2_0218_5_2 3108 7028 - HTH_AraC
pfam HRGMv2_0218_5 HRGMv2_0218_5_3 7307 8479 + Lipase_GDSL | Lipase_GDSL_2
TC HRGMv2_0218_5 HRGMv2_0218_5_4 8492 9895 + 2.A.2.3.2
CAZyme HRGMv2_0218_5 HRGMv2_0218_5_5 9927 11051 + GH10
CAZyme HRGMv2_0218_5 HRGMv2_0218_5_6 11099 12064 + GH43_1
pfam HRGMv2_0218_5 HRGMv2_0218_5_7 12325 13725 + DUF5687
TC HRGMv2_0218_5 HRGMv2_0218_5_8 13762 14472 + 3.A.1.124.5
Gene ID: HRGMv2_0218_5_1
Type: CAZyme
Location: 1021 - 3024 (-)
Gene ID: HRGMv2_0218_5_2
Type: TF
Location: 3108 - 7028 (-)
Gene ID: HRGMv2_0218_5_3
Type: pfam
Location: 7307 - 8479 (+)
Gene ID: HRGMv2_0218_5_4
Type: TC
Location: 8492 - 9895 (+)
Gene ID: HRGMv2_0218_5_5
Type: CAZyme
Location: 9927 - 11051 (+)
Gene ID: HRGMv2_0218_5_6
Type: CAZyme
Location: 11099 - 12064 (+)
Gene ID: HRGMv2_0218_5_7
Type: pfam
Location: 12325 - 13725 (+)
Gene ID: HRGMv2_0218_5_8
Type: TC
Location: 13762 - 14472 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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