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Cluster: HRGMv2_0218_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_45 HRGMv2_0218_45_1 481 1878 + GH5_21
TC HRGMv2_0218_45 HRGMv2_0218_45_2 2004 5177 + 1.B.14.6.1
pfam HRGMv2_0218_45 HRGMv2_0218_45_3 5206 7098 + SusD_RagB | SusD-like_3
TC HRGMv2_0218_45 HRGMv2_0218_45_4 7147 9975 + 1.B.14.6.1
pfam HRGMv2_0218_45 HRGMv2_0218_45_5 10011 11819 + SusD_RagB | SusD-like_3
pfam HRGMv2_0218_45 HRGMv2_0218_45_6 11851 12882 + BT_3987-like_N
CAZyme HRGMv2_0218_45 HRGMv2_0218_45_7 12918 15194 + GH10
NULL(UNKNOWN) HRGMv2_0218_45 HRGMv2_0218_45_8 15970 16902 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0218_45 HRGMv2_0218_45_9 16906 19140 + CE6
Gene ID: HRGMv2_0218_45_1
Type: CAZyme
Location: 481 - 1878 (+)
Gene ID: HRGMv2_0218_45_2
Type: TC
Location: 2004 - 5177 (+)
Gene ID: HRGMv2_0218_45_3
Type: pfam
Location: 5206 - 7098 (+)
Gene ID: HRGMv2_0218_45_4
Type: TC
Location: 7147 - 9975 (+)
Gene ID: HRGMv2_0218_45_5
Type: pfam
Location: 10011 - 11819 (+)
Gene ID: HRGMv2_0218_45_6
Type: pfam
Location: 11851 - 12882 (+)
Gene ID: HRGMv2_0218_45_7
Type: CAZyme
Location: 12918 - 15194 (+)
Gene ID: HRGMv2_0218_45_8
Type:
Location: 15970 - 16902 (+)
Gene ID: HRGMv2_0218_45_9
Type: CAZyme
Location: 16906 - 19140 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_45_2 vegetarian > omnivore 1.30292 0.02323

🧭 Explore Read Mapping of CGC

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