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Cluster: HRGMv2_0218_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_25 HRGMv2_0218_25_2 172 1593 - GT19
pfam HRGMv2_0218_25 HRGMv2_0218_25_3 1622 2386 - SurE
TC HRGMv2_0218_25 HRGMv2_0218_25_4 2541 3305 + 8.A.3.2.3
pfam HRGMv2_0218_25 HRGMv2_0218_25_5 3369 4280 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_0218_25 HRGMv2_0218_25_6 4313 5071 + DUF5683
CAZyme HRGMv2_0218_25 HRGMv2_0218_25_7 5134 6525 + GH23
STP HRGMv2_0218_25 HRGMv2_0218_25_8 6629 8911 + HD
CAZyme HRGMv2_0218_25 HRGMv2_0218_25_9 9040 10029 + CE8
Gene ID: HRGMv2_0218_25_2
Type: CAZyme
Location: 172 - 1593 (-)
Gene ID: HRGMv2_0218_25_3
Type: pfam
Location: 1622 - 2386 (-)
Gene ID: HRGMv2_0218_25_4
Type: TC
Location: 2541 - 3305 (+)
Gene ID: HRGMv2_0218_25_5
Type: pfam
Location: 3369 - 4280 (+)
Gene ID: HRGMv2_0218_25_6
Type: pfam
Location: 4313 - 5071 (+)
Gene ID: HRGMv2_0218_25_7
Type: CAZyme
Location: 5134 - 6525 (+)
Gene ID: HRGMv2_0218_25_8
Type: STP
Location: 6629 - 8911 (+)
Gene ID: HRGMv2_0218_25_9
Type: CAZyme
Location: 9040 - 10029 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_25_5 vegetarian > omnivore 1.35952 0.02323
HRGMv2_0218_25_9 vegetarian > vegan 1.41203 0.00972

🧭 Explore Read Mapping of CGC

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