Cluster: HRGMv2_0218_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0218
- CGC Family ID: CGCFAM_00444
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0218_24 | HRGMv2_0218_24_11 | 12724 | 15723 | - | 1.B.14.6.1 |
| TF | HRGMv2_0218_24 | HRGMv2_0218_24_12 | 15835 | 17046 | - | 0040266 |
| STP | HRGMv2_0218_24 | HRGMv2_0218_24_13 | 17461 | 19452 | + | PIG-L |
| CAZyme | HRGMv2_0218_24 | HRGMv2_0218_24_14 | 19500 | 21842 | + | GH20 |
| CAZyme | HRGMv2_0218_24 | HRGMv2_0218_24_15 | 21893 | 25042 | + | GH2 |
Gene ID: HRGMv2_0218_24_11
Type: TC
Location: 12724 - 15723 (-)
Type: TC
Location: 12724 - 15723 (-)
Gene ID: HRGMv2_0218_24_12
Type: TF
Location: 15835 - 17046 (-)
Type: TF
Location: 15835 - 17046 (-)
Gene ID: HRGMv2_0218_24_13
Type: STP
Location: 17461 - 19452 (+)
Type: STP
Location: 17461 - 19452 (+)
Gene ID: HRGMv2_0218_24_14
Type: CAZyme
Location: 19500 - 21842 (+)
Type: CAZyme
Location: 19500 - 21842 (+)
Gene ID: HRGMv2_0218_24_15
Type: CAZyme
Location: 21893 - 25042 (+)
Type: CAZyme
Location: 21893 - 25042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900767615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0218_24_11 | vegetarian > vegan | 1.82614 | 0.00972 |
| HRGMv2_0218_24_12 | vegetarian > vegan | 1.11003 | 0.00408 |