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Cluster: HRGMv2_0218_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_22 HRGMv2_0218_22_6 6145 8601 - GH2
CAZyme HRGMv2_0218_22 HRGMv2_0218_22_7 8620 9720 - GH53
CAZyme HRGMv2_0218_22 HRGMv2_0218_22_8 9988 11880 - PL1
NULL(UNKNOWN) HRGMv2_0218_22 HRGMv2_0218_22_9 11880 12236 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0218_22 HRGMv2_0218_22_10 12405 14468 - SusD_RagB | SusD-like_3
TC HRGMv2_0218_22 HRGMv2_0218_22_11 14485 17550 - 1.B.14.6.1
pfam HRGMv2_0218_22 HRGMv2_0218_22_12 18160 19128 + HHH_3 | HHH_3 | HHH_3
TC HRGMv2_0218_22 HRGMv2_0218_22_13 19135 20490 - 2.A.22.5.3
TC HRGMv2_0218_22 HRGMv2_0218_22_14 20577 21941 - 2.A.22.5.3
Gene ID: HRGMv2_0218_22_6
Type: CAZyme
Location: 6145 - 8601 (-)
Gene ID: HRGMv2_0218_22_7
Type: CAZyme
Location: 8620 - 9720 (-)
Gene ID: HRGMv2_0218_22_8
Type: CAZyme
Location: 9988 - 11880 (-)
Gene ID: HRGMv2_0218_22_9
Type:
Location: 11880 - 12236 (-)
Gene ID: HRGMv2_0218_22_10
Type: pfam
Location: 12405 - 14468 (-)
Gene ID: HRGMv2_0218_22_11
Type: TC
Location: 14485 - 17550 (-)
Gene ID: HRGMv2_0218_22_12
Type: pfam
Location: 18160 - 19128 (+)
Gene ID: HRGMv2_0218_22_13
Type: TC
Location: 19135 - 20490 (-)
Gene ID: HRGMv2_0218_22_14
Type: TC
Location: 20577 - 21941 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_22_8 vegetarian > vegan 2.49032 0.00220

🧭 Explore Read Mapping of CGC

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