Cluster: HRGMv2_0218_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0218
- CGC Family ID: CGCFAM_05958
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_9 | 10980 | 11378 | + | 3.D.1.8.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_10 | 11369 | 12094 | + | 3.D.1.6.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_11 | 12114 | 13685 | + | 3.D.1.5.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_12 | 13688 | 14773 | + | 3.D.1.5.1 |
| STP | HRGMv2_0218_17 | HRGMv2_0218_17_13 | 14808 | 15338 | + | Fer4 | Fer4 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_14 | 15375 | 15881 | + | 3.D.9.1.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_15 | 15878 | 16186 | + | 3.D.1.2.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_16 | 16193 | 18148 | + | 3.D.1.8.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_17 | 18182 | 19681 | + | 3.D.1.5.1 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_18 | 19697 | 21148 | + | 3.D.1.2.1 |
| pfam | HRGMv2_0218_17 | HRGMv2_0218_17_19 | 21315 | 21485 | + | DUF4250 |
| TC | HRGMv2_0218_17 | HRGMv2_0218_17_20 | 21570 | 22463 | + | 2.A.115.1.1 |
| pfam | HRGMv2_0218_17 | HRGMv2_0218_17_21 | 22614 | 25439 | - | UvrA_DNA-bind | UvrA_inter |
| sulfatase | HRGMv2_0218_17 | HRGMv2_0218_17_22 | 25485 | 26159 | - | S1_4 |
| CAZyme | HRGMv2_0218_17 | HRGMv2_0218_17_23 | 26337 | 27746 | + | CBM50 |
Gene ID: HRGMv2_0218_17_9
Type: TC
Location: 10980 - 11378 (+)
Type: TC
Location: 10980 - 11378 (+)
Gene ID: HRGMv2_0218_17_10
Type: TC
Location: 11369 - 12094 (+)
Type: TC
Location: 11369 - 12094 (+)
Gene ID: HRGMv2_0218_17_11
Type: TC
Location: 12114 - 13685 (+)
Type: TC
Location: 12114 - 13685 (+)
Gene ID: HRGMv2_0218_17_12
Type: TC
Location: 13688 - 14773 (+)
Type: TC
Location: 13688 - 14773 (+)
Gene ID: HRGMv2_0218_17_13
Type: STP
Location: 14808 - 15338 (+)
Type: STP
Location: 14808 - 15338 (+)
Gene ID: HRGMv2_0218_17_14
Type: TC
Location: 15375 - 15881 (+)
Type: TC
Location: 15375 - 15881 (+)
Gene ID: HRGMv2_0218_17_15
Type: TC
Location: 15878 - 16186 (+)
Type: TC
Location: 15878 - 16186 (+)
Gene ID: HRGMv2_0218_17_16
Type: TC
Location: 16193 - 18148 (+)
Type: TC
Location: 16193 - 18148 (+)
Gene ID: HRGMv2_0218_17_17
Type: TC
Location: 18182 - 19681 (+)
Type: TC
Location: 18182 - 19681 (+)
Gene ID: HRGMv2_0218_17_18
Type: TC
Location: 19697 - 21148 (+)
Type: TC
Location: 19697 - 21148 (+)
Gene ID: HRGMv2_0218_17_19
Type: pfam
Location: 21315 - 21485 (+)
Type: pfam
Location: 21315 - 21485 (+)
Gene ID: HRGMv2_0218_17_20
Type: TC
Location: 21570 - 22463 (+)
Type: TC
Location: 21570 - 22463 (+)
Gene ID: HRGMv2_0218_17_21
Type: pfam
Location: 22614 - 25439 (-)
Type: pfam
Location: 22614 - 25439 (-)
Gene ID: HRGMv2_0218_17_22
Type: sulfatase
Location: 25485 - 26159 (-)
Type: sulfatase
Location: 25485 - 26159 (-)
Gene ID: HRGMv2_0218_17_23
Type: CAZyme
Location: 26337 - 27746 (+)
Type: CAZyme
Location: 26337 - 27746 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900767615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.