Cluster: HRGMv2_0218_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0218
- CGC Family ID: CGCFAM_00180
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0218_13 | HRGMv2_0218_13_10 | 14231 | 16084 | + | 3.A.1.106.2 |
| pfam | HRGMv2_0218_13 | HRGMv2_0218_13_11 | 16137 | 17066 | + | Lip_A_acyltrans |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_12 | 17105 | 17923 | + | GT11 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_13 | 17931 | 18836 | + | GT32 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_14 | 18851 | 19651 | + | GT2 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_15 | 19738 | 20673 | - | GT2 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_16 | 20663 | 21439 | - | GT2 |
| pfam | HRGMv2_0218_13 | HRGMv2_0218_13_17 | 21494 | 23485 | - | Sulfatase |
| pfam | HRGMv2_0218_13 | HRGMv2_0218_13_18 | 23561 | 24748 | - | GT87 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_19 | 24906 | 26144 | + | GT4 |
| CAZyme | HRGMv2_0218_13 | HRGMv2_0218_13_20 | 26193 | 27122 | - | GT2 |
Gene ID: HRGMv2_0218_13_10
Type: TC
Location: 14231 - 16084 (+)
Type: TC
Location: 14231 - 16084 (+)
Gene ID: HRGMv2_0218_13_11
Type: pfam
Location: 16137 - 17066 (+)
Type: pfam
Location: 16137 - 17066 (+)
Gene ID: HRGMv2_0218_13_12
Type: CAZyme
Location: 17105 - 17923 (+)
Type: CAZyme
Location: 17105 - 17923 (+)
Gene ID: HRGMv2_0218_13_13
Type: CAZyme
Location: 17931 - 18836 (+)
Type: CAZyme
Location: 17931 - 18836 (+)
Gene ID: HRGMv2_0218_13_14
Type: CAZyme
Location: 18851 - 19651 (+)
Type: CAZyme
Location: 18851 - 19651 (+)
Gene ID: HRGMv2_0218_13_15
Type: CAZyme
Location: 19738 - 20673 (-)
Type: CAZyme
Location: 19738 - 20673 (-)
Gene ID: HRGMv2_0218_13_16
Type: CAZyme
Location: 20663 - 21439 (-)
Type: CAZyme
Location: 20663 - 21439 (-)
Gene ID: HRGMv2_0218_13_17
Type: pfam
Location: 21494 - 23485 (-)
Type: pfam
Location: 21494 - 23485 (-)
Gene ID: HRGMv2_0218_13_18
Type: pfam
Location: 23561 - 24748 (-)
Type: pfam
Location: 23561 - 24748 (-)
Gene ID: HRGMv2_0218_13_19
Type: CAZyme
Location: 24906 - 26144 (+)
Type: CAZyme
Location: 24906 - 26144 (+)
Gene ID: HRGMv2_0218_13_20
Type: CAZyme
Location: 26193 - 27122 (-)
Type: CAZyme
Location: 26193 - 27122 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900767615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0218_13_11 | vegetarian > omnivore | 2.04985 | 0.02323 |
| HRGMv2_0218_13_11 | vegetarian > vegan | 3.59877 | 0.00972 |
| HRGMv2_0218_13_12 | vegetarian > omnivore | 4.93146 | 0.02323 |
| HRGMv2_0218_13_12 | vegetarian > vegan | 3.51771 | 0.00972 |
| HRGMv2_0218_13_17 | vegetarian > omnivore | 1.38124 | 0.02323 |
| HRGMv2_0218_13_17 | vegetarian > vegan | 2.90673 | 0.00972 |