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Cluster: HRGMv2_0218_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0218_12 HRGMv2_0218_12_2 1122 4328 + 1.B.14.6.1
pfam HRGMv2_0218_12 HRGMv2_0218_12_3 4378 6135 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0218_12 HRGMv2_0218_12_4 6170 7909 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0218_12 HRGMv2_0218_12_5 8040 10715 + GH43_4
CAZyme HRGMv2_0218_12 HRGMv2_0218_12_6 10748 11821 + GH43_5
CAZyme HRGMv2_0218_12 HRGMv2_0218_12_7 12049 14490 - GH51_2
Gene ID: HRGMv2_0218_12_2
Type: TC
Location: 1122 - 4328 (+)
Gene ID: HRGMv2_0218_12_3
Type: pfam
Location: 4378 - 6135 (+)
Gene ID: HRGMv2_0218_12_4
Type:
Location: 6170 - 7909 (+)
Gene ID: HRGMv2_0218_12_5
Type: CAZyme
Location: 8040 - 10715 (+)
Gene ID: HRGMv2_0218_12_6
Type: CAZyme
Location: 10748 - 11821 (+)
Gene ID: HRGMv2_0218_12_7
Type: CAZyme
Location: 12049 - 14490 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_12_2 vegetarian > omnivore 1.03506 0.02323
HRGMv2_0218_12_2 vegetarian > vegan 1.05615 0.00972
HRGMv2_0218_12_3 vegetarian > omnivore 1.18117 0.02323
HRGMv2_0218_12_3 vegetarian > vegan 1.12671 0.00972

🧭 Explore Read Mapping of CGC

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