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Cluster: HRGMv2_0218_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_1 1 3237 + CE8
TC HRGMv2_0218_11 HRGMv2_0218_11_2 3596 6904 + 1.B.14.6.1
TC HRGMv2_0218_11 HRGMv2_0218_11_3 6925 8982 + 8.A.46.1.3
NULL(UNKNOWN) HRGMv2_0218_11 HRGMv2_0218_11_4 9050 10747 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0218_11 HRGMv2_0218_11_5 10908 11798 + PDDEXK_2
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_6 11989 13983 + GH28
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_7 14035 15825 + GH43_10
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_8 15939 17369 - GH57
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_9 17407 18675 - GT4
CAZyme HRGMv2_0218_11 HRGMv2_0218_11_10 18693 20606 - GH133
Gene ID: HRGMv2_0218_11_1
Type: CAZyme
Location: 1 - 3237 (+)
Gene ID: HRGMv2_0218_11_2
Type: TC
Location: 3596 - 6904 (+)
Gene ID: HRGMv2_0218_11_3
Type: TC
Location: 6925 - 8982 (+)
Gene ID: HRGMv2_0218_11_4
Type:
Location: 9050 - 10747 (+)
Gene ID: HRGMv2_0218_11_5
Type: pfam
Location: 10908 - 11798 (+)
Gene ID: HRGMv2_0218_11_6
Type: CAZyme
Location: 11989 - 13983 (+)
Gene ID: HRGMv2_0218_11_7
Type: CAZyme
Location: 14035 - 15825 (+)
Gene ID: HRGMv2_0218_11_8
Type: CAZyme
Location: 15939 - 17369 (-)
Gene ID: HRGMv2_0218_11_9
Type: CAZyme
Location: 17407 - 18675 (-)
Gene ID: HRGMv2_0218_11_10
Type: CAZyme
Location: 18693 - 20606 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_11_5 vegetarian > omnivore 1.48169 0.00629
HRGMv2_0218_11_5 vegetarian > vegan 3.65813 0.00116

🧭 Explore Read Mapping of CGC

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