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Cluster: HRGMv2_0218_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0218_10 HRGMv2_0218_10_19 24128 25432 + GH33
TC HRGMv2_0218_10 HRGMv2_0218_10_20 25453 28806 + 1.B.14.6.1
TC HRGMv2_0218_10 HRGMv2_0218_10_21 28819 30381 + 8.A.46.1.4
CAZyme HRGMv2_0218_10 HRGMv2_0218_10_22 30491 32356 + GH20
CAZyme HRGMv2_0218_10 HRGMv2_0218_10_23 32419 35679 + CE20
pfam HRGMv2_0218_10 HRGMv2_0218_10_24 35885 36241 + P-II
TC HRGMv2_0218_10 HRGMv2_0218_10_25 36310 37572 + 1.A.11.2.7
Gene ID: HRGMv2_0218_10_19
Type: CAZyme
Location: 24128 - 25432 (+)
Gene ID: HRGMv2_0218_10_20
Type: TC
Location: 25453 - 28806 (+)
Gene ID: HRGMv2_0218_10_21
Type: TC
Location: 28819 - 30381 (+)
Gene ID: HRGMv2_0218_10_22
Type: CAZyme
Location: 30491 - 32356 (+)
Gene ID: HRGMv2_0218_10_23
Type: CAZyme
Location: 32419 - 35679 (+)
Gene ID: HRGMv2_0218_10_24
Type: pfam
Location: 35885 - 36241 (+)
Gene ID: HRGMv2_0218_10_25
Type: TC
Location: 36310 - 37572 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0218_10_24 vegetarian > vegan 1.08260 0.00972

🧭 Explore Read Mapping of CGC

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