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Cluster: HRGMv2_0218_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0218_9 HRGMv2_0218_9_11 12814 16134 + 1.B.14.6.1
pfam HRGMv2_0218_9 HRGMv2_0218_9_12 16208 18466 + SusD_RagB | SusD-like_3
TC HRGMv2_0218_9 HRGMv2_0218_9_13 18510 21380 + 1.B.14.6.1
pfam HRGMv2_0218_9 HRGMv2_0218_9_14 21399 23225 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0218_9 HRGMv2_0218_9_15 23361 25487 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0218_9 HRGMv2_0218_9_16 25680 30281 + PL11
CAZyme HRGMv2_0218_9 HRGMv2_0218_9_17 30378 31955 - GH28
Gene ID: HRGMv2_0218_9_11
Type: TC
Location: 12814 - 16134 (+)
Gene ID: HRGMv2_0218_9_12
Type: pfam
Location: 16208 - 18466 (+)
Gene ID: HRGMv2_0218_9_13
Type: TC
Location: 18510 - 21380 (+)
Gene ID: HRGMv2_0218_9_14
Type: pfam
Location: 21399 - 23225 (+)
Gene ID: HRGMv2_0218_9_15
Type:
Location: 23361 - 25487 (+)
Gene ID: HRGMv2_0218_9_16
Type: CAZyme
Location: 25680 - 30281 (+)
Gene ID: HRGMv2_0218_9_17
Type: CAZyme
Location: 30378 - 31955 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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