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Cluster: HRGMv2_0217_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0217_48 HRGMv2_0217_48_9 9112 10353 - 2.A.1.35.1
TF HRGMv2_0217_48 HRGMv2_0217_48_10 10416 14753 - HTH_AraC
TC HRGMv2_0217_48 HRGMv2_0217_48_11 14962 18117 + 1.B.14.6.1
pfam HRGMv2_0217_48 HRGMv2_0217_48_12 18131 20314 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0217_48 HRGMv2_0217_48_13 20535 22649 + PL11_1
CAZyme HRGMv2_0217_48 HRGMv2_0217_48_14 22756 24372 + CE12 | CE12
CAZyme HRGMv2_0217_48 HRGMv2_0217_48_15 24409 25665 + CE12
CAZyme HRGMv2_0217_48 HRGMv2_0217_48_16 25753 28221 + GH2
Gene ID: HRGMv2_0217_48_9
Type: TC
Location: 9112 - 10353 (-)
Gene ID: HRGMv2_0217_48_10
Type: TF
Location: 10416 - 14753 (-)
Gene ID: HRGMv2_0217_48_11
Type: TC
Location: 14962 - 18117 (+)
Gene ID: HRGMv2_0217_48_12
Type: pfam
Location: 18131 - 20314 (+)
Gene ID: HRGMv2_0217_48_13
Type: CAZyme
Location: 20535 - 22649 (+)
Gene ID: HRGMv2_0217_48_14
Type: CAZyme
Location: 22756 - 24372 (+)
Gene ID: HRGMv2_0217_48_15
Type: CAZyme
Location: 24409 - 25665 (+)
Gene ID: HRGMv2_0217_48_16
Type: CAZyme
Location: 25753 - 28221 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0217_48_11 vegetarian > vegan 2.43750 0.01274
HRGMv2_0217_48_12 vegetarian > vegan 4.52292 0.01274

🧭 Explore Read Mapping of CGC

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