Cluster: HRGMv2_0217_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_01208
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0217_31 | HRGMv2_0217_31_4 | 2988 | 4958 | - | 3.A.3.5.18 |
| NULL(UNKNOWN) | HRGMv2_0217_31 | HRGMv2_0217_31_5 | 5094 | 5507 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0217_31 | HRGMv2_0217_31_6 | 5572 | 5784 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0217_31 | HRGMv2_0217_31_7 | 5971 | 8232 | + | GH3 |
| CAZyme | HRGMv2_0217_31 | HRGMv2_0217_31_8 | 8397 | 10616 | + | GH3 |
Gene ID: HRGMv2_0217_31_4
Type: TC
Location: 2988 - 4958 (-)
Type: TC
Location: 2988 - 4958 (-)
Gene ID: HRGMv2_0217_31_5
Type:
Location: 5094 - 5507 (-)
Type:
Location: 5094 - 5507 (-)
Gene ID: HRGMv2_0217_31_6
Type:
Location: 5572 - 5784 (-)
Type:
Location: 5572 - 5784 (-)
Gene ID: HRGMv2_0217_31_7
Type: CAZyme
Location: 5971 - 8232 (+)
Type: CAZyme
Location: 5971 - 8232 (+)
Gene ID: HRGMv2_0217_31_8
Type: CAZyme
Location: 8397 - 10616 (+)
Type: CAZyme
Location: 8397 - 10616 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0217_31_4 | vegetarian > vegan | 1.08863 | 0.01274 |