dbCAN HGM

Cluster: HRGMv2_0217_CGC26

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_0217_106	HRGMv2_0217_106_19	28380	31469	+	GH2
pfam	HRGMv2_0217_106	HRGMv2_0217_106_20	31510	32385	+	SASA
CAZyme	HRGMv2_0217_106	HRGMv2_0217_106_21	32428	33375	+	CE4
CAZyme	HRGMv2_0217_106	HRGMv2_0217_106_22	33579	36155	+	GH106
CAZyme	HRGMv2_0217_106	HRGMv2_0217_106_23	36184	37311	+	GH105
CAZyme	HRGMv2_0217_106	HRGMv2_0217_106_24	37431	38822	+	GH28
TC	HRGMv2_0217_106	HRGMv2_0217_106_25	38951	39697	+	3.A.1.122.2
pfam	HRGMv2_0217_106	HRGMv2_0217_106_26	39694	40446	+	S1_2
NULL(UNKNOWN)	HRGMv2_0217_106	HRGMv2_0217_106_27	40754	41392	+	NULL(UNKNOWN) [View Structural Homologs]
TC	HRGMv2_0217_106	HRGMv2_0217_106_28	41421	44597	+	1.B.14.6.3

Gene ID: HRGMv2_0217_106_19
Type: CAZyme
Location: 28380 - 31469 (+)

Gene ID: HRGMv2_0217_106_20
Type: pfam
Location: 31510 - 32385 (+)

Gene ID: HRGMv2_0217_106_21
Type: CAZyme
Location: 32428 - 33375 (+)

Gene ID: HRGMv2_0217_106_22
Type: CAZyme
Location: 33579 - 36155 (+)

Gene ID: HRGMv2_0217_106_23
Type: CAZyme
Location: 36184 - 37311 (+)

Gene ID: HRGMv2_0217_106_24
Type: CAZyme
Location: 37431 - 38822 (+)

Gene ID: HRGMv2_0217_106_25
Type: TC
Location: 38951 - 39697 (+)

Gene ID: HRGMv2_0217_106_26
Type: pfam
Location: 39694 - 40446 (+)

Gene ID: HRGMv2_0217_106_27
Type:
Location: 40754 - 41392 (+)

Gene ID: HRGMv2_0217_106_28
Type: TC
Location: 41421 - 44597 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0217_106_27	vegetarian > vegan	3.36366	0.01274
HRGMv2_0217_106_28	vegetarian > vegan	2.33117	0.01274

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_0217_106_26	UC > CD	1.12674	0.01150