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Cluster: HRGMv2_0217_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0217_106 HRGMv2_0217_106_3 3189 5720 + GH31_4
TC HRGMv2_0217_106 HRGMv2_0217_106_4 6264 7295 + 9.A.40.2.4
pfam HRGMv2_0217_106 HRGMv2_0217_106_5 7352 9130 - SusD_RagB | SusD-like_3
TC HRGMv2_0217_106 HRGMv2_0217_106_6 9152 11977 - 1.B.14.6.1
pfam HRGMv2_0217_106 HRGMv2_0217_106_7 12046 14082 - SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0217_106 HRGMv2_0217_106_8 14121 14507 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0217_106 HRGMv2_0217_106_9 14462 17302 - 1.B.14.6.1
Gene ID: HRGMv2_0217_106_3
Type: CAZyme
Location: 3189 - 5720 (+)
Gene ID: HRGMv2_0217_106_4
Type: TC
Location: 6264 - 7295 (+)
Gene ID: HRGMv2_0217_106_5
Type: pfam
Location: 7352 - 9130 (-)
Gene ID: HRGMv2_0217_106_6
Type: TC
Location: 9152 - 11977 (-)
Gene ID: HRGMv2_0217_106_7
Type: pfam
Location: 12046 - 14082 (-)
Gene ID: HRGMv2_0217_106_8
Type:
Location: 14121 - 14507 (-)
Gene ID: HRGMv2_0217_106_9
Type: TC
Location: 14462 - 17302 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0217_106_4 vegetarian > omnivore 1.46480 0.00290

🧭 Explore Read Mapping of CGC

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