Cluster: HRGMv2_0217_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_04803
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0217_95 | HRGMv2_0217_95_7 | 5682 | 7718 | + | GH20 |
| pfam | HRGMv2_0217_95 | HRGMv2_0217_95_8 | 8012 | 8905 | + | Mfa2 |
| pfam | HRGMv2_0217_95 | HRGMv2_0217_95_9 | 9016 | 9774 | - | GDPD |
| TC | HRGMv2_0217_95 | HRGMv2_0217_95_10 | 9825 | 12551 | - | 1.B.14.8.1 |
| pfam | HRGMv2_0217_95 | HRGMv2_0217_95_11 | 12758 | 14383 | + | Phosphodiest |
| TC | HRGMv2_0217_95 | HRGMv2_0217_95_12 | 14523 | 15218 | + | 9.B.20.1.2 |
| CAZyme | HRGMv2_0217_95 | HRGMv2_0217_95_13 | 15405 | 16583 | + | GT1 |
| sulfatase | HRGMv2_0217_95 | HRGMv2_0217_95_14 | 16522 | 17508 | + | S1_20 |
| CAZyme | HRGMv2_0217_95 | HRGMv2_0217_95_15 | 17558 | 18742 | + | GT4 |
| pfam | HRGMv2_0217_95 | HRGMv2_0217_95_16 | 18819 | 19844 | + | LPG_synthase_TM |
| pfam | HRGMv2_0217_95 | HRGMv2_0217_95_17 | 20482 | 21522 | - | OprB |
| TC | HRGMv2_0217_95 | HRGMv2_0217_95_18 | 21778 | 22791 | - | 3.A.3.4.1 |
| TC | HRGMv2_0217_95 | HRGMv2_0217_95_19 | 22782 | 24443 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_0217_95_7
Type: CAZyme
Location: 5682 - 7718 (+)
Type: CAZyme
Location: 5682 - 7718 (+)
Gene ID: HRGMv2_0217_95_8
Type: pfam
Location: 8012 - 8905 (+)
Type: pfam
Location: 8012 - 8905 (+)
Gene ID: HRGMv2_0217_95_9
Type: pfam
Location: 9016 - 9774 (-)
Type: pfam
Location: 9016 - 9774 (-)
Gene ID: HRGMv2_0217_95_10
Type: TC
Location: 9825 - 12551 (-)
Type: TC
Location: 9825 - 12551 (-)
Gene ID: HRGMv2_0217_95_11
Type: pfam
Location: 12758 - 14383 (+)
Type: pfam
Location: 12758 - 14383 (+)
Gene ID: HRGMv2_0217_95_12
Type: TC
Location: 14523 - 15218 (+)
Type: TC
Location: 14523 - 15218 (+)
Gene ID: HRGMv2_0217_95_13
Type: CAZyme
Location: 15405 - 16583 (+)
Type: CAZyme
Location: 15405 - 16583 (+)
Gene ID: HRGMv2_0217_95_14
Type: sulfatase
Location: 16522 - 17508 (+)
Type: sulfatase
Location: 16522 - 17508 (+)
Gene ID: HRGMv2_0217_95_15
Type: CAZyme
Location: 17558 - 18742 (+)
Type: CAZyme
Location: 17558 - 18742 (+)
Gene ID: HRGMv2_0217_95_16
Type: pfam
Location: 18819 - 19844 (+)
Type: pfam
Location: 18819 - 19844 (+)
Gene ID: HRGMv2_0217_95_17
Type: pfam
Location: 20482 - 21522 (-)
Type: pfam
Location: 20482 - 21522 (-)
Gene ID: HRGMv2_0217_95_18
Type: TC
Location: 21778 - 22791 (-)
Type: TC
Location: 21778 - 22791 (-)
Gene ID: HRGMv2_0217_95_19
Type: TC
Location: 22782 - 24443 (-)
Type: TC
Location: 22782 - 24443 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0217_95_9 | vegetarian > vegan | 2.00050 | 0.01274 |
| HRGMv2_0217_95_10 | vegetarian > vegan | 2.98700 | 0.01274 |
| HRGMv2_0217_95_13 | vegetarian > vegan | 1.92319 | 0.01274 |
| HRGMv2_0217_95_14 | vegetarian > vegan | 1.81168 | 0.01274 |