Cluster: HRGMv2_0217_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_02564
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0217_86 | HRGMv2_0217_86_3 | 2098 | 3873 | + | 3.B.1.1.6 |
| STP | HRGMv2_0217_86 | HRGMv2_0217_86_4 | 3885 | 4424 | + | HD |
| TC | HRGMv2_0217_86 | HRGMv2_0217_86_5 | 4639 | 7467 | + | 1.B.42.1.8 |
| CAZyme | HRGMv2_0217_86 | HRGMv2_0217_86_6 | 7630 | 10086 | + | GH95 |
| NULL(UNKNOWN) | HRGMv2_0217_86 | HRGMv2_0217_86_7 | 10152 | 10889 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0217_86 | HRGMv2_0217_86_8 | 10889 | 11887 | - | PIF1 | AAA_19 | AAA_22 | AAA_30 |
| CAZyme | HRGMv2_0217_86 | HRGMv2_0217_86_9 | 11897 | 14443 | - | GT51 |
Gene ID: HRGMv2_0217_86_3
Type: TC
Location: 2098 - 3873 (+)
Type: TC
Location: 2098 - 3873 (+)
Gene ID: HRGMv2_0217_86_4
Type: STP
Location: 3885 - 4424 (+)
Type: STP
Location: 3885 - 4424 (+)
Gene ID: HRGMv2_0217_86_5
Type: TC
Location: 4639 - 7467 (+)
Type: TC
Location: 4639 - 7467 (+)
Gene ID: HRGMv2_0217_86_6
Type: CAZyme
Location: 7630 - 10086 (+)
Type: CAZyme
Location: 7630 - 10086 (+)
Gene ID: HRGMv2_0217_86_7
Type:
Location: 10152 - 10889 (-)
Type:
Location: 10152 - 10889 (-)
Gene ID: HRGMv2_0217_86_8
Type: pfam
Location: 10889 - 11887 (-)
Type: pfam
Location: 10889 - 11887 (-)
Gene ID: HRGMv2_0217_86_9
Type: CAZyme
Location: 11897 - 14443 (-)
Type: CAZyme
Location: 11897 - 14443 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.