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Cluster: HRGMv2_0217_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0217_65 HRGMv2_0217_65_2 208 1875 + 8.A.46.1.1
pfam HRGMv2_0217_65 HRGMv2_0217_65_3 1888 3276 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_0217_65 HRGMv2_0217_65_4 3401 4477 + GH53
CAZyme HRGMv2_0217_65 HRGMv2_0217_65_5 4557 7010 + GH2
NULL(UNKNOWN) HRGMv2_0217_65 HRGMv2_0217_65_6 7375 7707 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0217_65 HRGMv2_0217_65_7 7719 10226 + HTH_AraC
TC HRGMv2_0217_65 HRGMv2_0217_65_8 10504 13443 + 1.B.14.6.1
TC HRGMv2_0217_65 HRGMv2_0217_65_9 13464 14990 + 8.A.46.1.5
Gene ID: HRGMv2_0217_65_2
Type: TC
Location: 208 - 1875 (+)
Gene ID: HRGMv2_0217_65_3
Type: pfam
Location: 1888 - 3276 (+)
Gene ID: HRGMv2_0217_65_4
Type: CAZyme
Location: 3401 - 4477 (+)
Gene ID: HRGMv2_0217_65_5
Type: CAZyme
Location: 4557 - 7010 (+)
Gene ID: HRGMv2_0217_65_6
Type:
Location: 7375 - 7707 (+)
Gene ID: HRGMv2_0217_65_7
Type: TF
Location: 7719 - 10226 (+)
Gene ID: HRGMv2_0217_65_8
Type: TC
Location: 10504 - 13443 (+)
Gene ID: HRGMv2_0217_65_9
Type: TC
Location: 13464 - 14990 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0217_65_2 vegetarian > omnivore 2.50906 0.00290
HRGMv2_0217_65_3 vegetarian > omnivore 1.51111 0.00417
HRGMv2_0217_65_8 vegetarian > vegan 1.15922 0.01274

🧭 Explore Read Mapping of CGC

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