Cluster: HRGMv2_0217_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0217
- CGC Family ID: CGCFAM_00023
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0217_3 | HRGMv2_0217_3_16 | 21452 | 24469 | + | 1.B.14.6.1 |
| TC | HRGMv2_0217_3 | HRGMv2_0217_3_17 | 24527 | 26143 | + | 8.A.46.1.3 |
| CAZyme | HRGMv2_0217_3 | HRGMv2_0217_3_18 | 26231 | 27997 | + | GH30_4 |
| CAZyme | HRGMv2_0217_3 | HRGMv2_0217_3_19 | 28229 | 29629 | + | GH30_4 |
| CAZyme | HRGMv2_0217_3 | HRGMv2_0217_3_20 | 29748 | 32114 | + | GH35 |
Gene ID: HRGMv2_0217_3_16
Type: TC
Location: 21452 - 24469 (+)
Type: TC
Location: 21452 - 24469 (+)
Gene ID: HRGMv2_0217_3_17
Type: TC
Location: 24527 - 26143 (+)
Type: TC
Location: 24527 - 26143 (+)
Gene ID: HRGMv2_0217_3_18
Type: CAZyme
Location: 26231 - 27997 (+)
Type: CAZyme
Location: 26231 - 27997 (+)
Gene ID: HRGMv2_0217_3_19
Type: CAZyme
Location: 28229 - 29629 (+)
Type: CAZyme
Location: 28229 - 29629 (+)
Gene ID: HRGMv2_0217_3_20
Type: CAZyme
Location: 29748 - 32114 (+)
Type: CAZyme
Location: 29748 - 32114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900544825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0217_3_16 | vegetarian > omnivore | 3.68107 | 0.01244 |
| HRGMv2_0217_3_17 | vegetarian > omnivore | 4.25167 | 0.00417 |
| HRGMv2_0217_3_18 | vegetarian > omnivore | 3.80903 | 0.01244 |
| HRGMv2_0217_3_19 | vegetarian > omnivore | 3.80099 | 0.00417 |
| HRGMv2_0217_3_20 | vegetarian > omnivore | 1.18673 | 0.01427 |