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Cluster: HRGMv2_0213_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0213_2 HRGMv2_0213_2_59 74888 76381 - GH173
TF HRGMv2_0213_2 HRGMv2_0213_2_60 76384 77229 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0213_2 HRGMv2_0213_2_61 77232 80645 - CE1 | GH2
TC HRGMv2_0213_2 HRGMv2_0213_2_62 80807 82381 + 2.A.21.3.19
CAZyme HRGMv2_0213_2 HRGMv2_0213_2_63 82425 83447 + GH130_5
TC HRGMv2_0213_2 HRGMv2_0213_2_64 83481 86567 + 1.B.14.6.1
pfam HRGMv2_0213_2 HRGMv2_0213_2_65 86582 88111 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0213_2 HRGMv2_0213_2_66 88117 89724 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0213_2 HRGMv2_0213_2_67 89956 90939 + GH26
Gene ID: HRGMv2_0213_2_59
Type: CAZyme
Location: 74888 - 76381 (-)
Gene ID: HRGMv2_0213_2_60
Type: TF
Location: 76384 - 77229 (-)
Gene ID: HRGMv2_0213_2_61
Type: CAZyme
Location: 77232 - 80645 (-)
Gene ID: HRGMv2_0213_2_62
Type: TC
Location: 80807 - 82381 (+)
Gene ID: HRGMv2_0213_2_63
Type: CAZyme
Location: 82425 - 83447 (+)
Gene ID: HRGMv2_0213_2_64
Type: TC
Location: 83481 - 86567 (+)
Gene ID: HRGMv2_0213_2_65
Type: pfam
Location: 86582 - 88111 (+)
Gene ID: HRGMv2_0213_2_66
Type:
Location: 88117 - 89724 (+)
Gene ID: HRGMv2_0213_2_67
Type: CAZyme
Location: 89956 - 90939 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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