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Cluster: HRGMv2_0213_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_48 66982 69114 + PL8
TF HRGMv2_0213_4 HRGMv2_0213_4_49 69051 73097 - HTH_AraC
TC HRGMv2_0213_4 HRGMv2_0213_4_50 73312 76581 + 1.B.14.6.1
pfam HRGMv2_0213_4 HRGMv2_0213_4_51 76609 78609 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_52 78641 80668 + PL35
NULL(UNKNOWN) HRGMv2_0213_4 HRGMv2_0213_4_53 80724 81179 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0213_4 HRGMv2_0213_4_54 81212 83359 + Mfa_like_1
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_55 83849 85078 + GH88
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_56 85134 87731 - GH78
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_57 87809 90010 - GH3
CAZyme HRGMv2_0213_4 HRGMv2_0213_4_58 90252 92486 + GH3
Gene ID: HRGMv2_0213_4_48
Type: CAZyme
Location: 66982 - 69114 (+)
Gene ID: HRGMv2_0213_4_49
Type: TF
Location: 69051 - 73097 (-)
Gene ID: HRGMv2_0213_4_50
Type: TC
Location: 73312 - 76581 (+)
Gene ID: HRGMv2_0213_4_51
Type: pfam
Location: 76609 - 78609 (+)
Gene ID: HRGMv2_0213_4_52
Type: CAZyme
Location: 78641 - 80668 (+)
Gene ID: HRGMv2_0213_4_53
Type:
Location: 80724 - 81179 (+)
Gene ID: HRGMv2_0213_4_54
Type: pfam
Location: 81212 - 83359 (+)
Gene ID: HRGMv2_0213_4_55
Type: CAZyme
Location: 83849 - 85078 (+)
Gene ID: HRGMv2_0213_4_56
Type: CAZyme
Location: 85134 - 87731 (-)
Gene ID: HRGMv2_0213_4_57
Type: CAZyme
Location: 87809 - 90010 (-)
Gene ID: HRGMv2_0213_4_58
Type: CAZyme
Location: 90252 - 92486 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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