Cluster: HRGMv2_0206_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0206
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0206_2 | HRGMv2_0206_2_4 | 2309 | 3712 | - | CE11 |
| NULL(UNKNOWN) | HRGMv2_0206_2 | HRGMv2_0206_2_5 | 3867 | 5165 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0206_2 | HRGMv2_0206_2_6 | 5367 | 6869 | + | 2.A.36.6.5 |
| pfam | HRGMv2_0206_2 | HRGMv2_0206_2_7 | 6938 | 7909 | - | IMPDH | FMN_dh | NMO | NMO |
| NULL(UNKNOWN) | HRGMv2_0206_2 | HRGMv2_0206_2_8 | 8033 | 10093 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0206_2 | HRGMv2_0206_2_9 | 10090 | 11862 | + | GH110 |
| CAZyme | HRGMv2_0206_2 | HRGMv2_0206_2_10 | 11872 | 13344 | + | CE20 |
Gene ID: HRGMv2_0206_2_4
Type: CAZyme
Location: 2309 - 3712 (-)
Type: CAZyme
Location: 2309 - 3712 (-)
Gene ID: HRGMv2_0206_2_5
Type:
Location: 3867 - 5165 (+)
Type:
Location: 3867 - 5165 (+)
Gene ID: HRGMv2_0206_2_6
Type: TC
Location: 5367 - 6869 (+)
Type: TC
Location: 5367 - 6869 (+)
Gene ID: HRGMv2_0206_2_7
Type: pfam
Location: 6938 - 7909 (-)
Type: pfam
Location: 6938 - 7909 (-)
Gene ID: HRGMv2_0206_2_8
Type:
Location: 8033 - 10093 (+)
Type:
Location: 8033 - 10093 (+)
Gene ID: HRGMv2_0206_2_9
Type: CAZyme
Location: 10090 - 11862 (+)
Type: CAZyme
Location: 10090 - 11862 (+)
Gene ID: HRGMv2_0206_2_10
Type: CAZyme
Location: 11872 - 13344 (+)
Type: CAZyme
Location: 11872 - 13344 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0206_2_9 | vegetarian > vegan | 1.03792 | 0.00243 |