Cluster: HRGMv2_0206_CGC22
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0206
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0206_13 | HRGMv2_0206_13_30 | 27828 | 29270 | - | 2.A.35.1.1 |
| pfam | HRGMv2_0206_13 | HRGMv2_0206_13_31 | 29558 | 29770 | + | DUF4492 |
| TC | HRGMv2_0206_13 | HRGMv2_0206_13_32 | 29767 | 31332 | + | 3.D.4.3.2 |
| pfam | HRGMv2_0206_13 | HRGMv2_0206_13_33 | 31342 | 32493 | + | Cyt_bd_oxida_II |
| pfam | HRGMv2_0206_13 | HRGMv2_0206_13_34 | 32580 | 33458 | - | adh_short | adh_short_C2 |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_35 | 33613 | 35964 | - | GH92 |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_36 | 36079 | 39528 | - | GH38 |
| sulfatase | HRGMv2_0206_13 | HRGMv2_0206_13_37 | 39567 | 40502 | - | S1_48 |
| TC | HRGMv2_0206_13 | HRGMv2_0206_13_38 | 40540 | 42213 | - | 8.A.46.1.6 |
| TC | HRGMv2_0206_13 | HRGMv2_0206_13_39 | 42232 | 45030 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0206_13 | HRGMv2_0206_13_40 | 45027 | 45263 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_41 | 45533 | 47956 | - | GH2 |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_42 | 48100 | 50397 | + | GH92 |
| NULL(UNKNOWN) | HRGMv2_0206_13 | HRGMv2_0206_13_43 | 50587 | 52332 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_0206_13 | HRGMv2_0206_13_44 | 52356 | 53459 | + | S1_7 |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_45 | 53517 | 55547 | + | GH38 |
| TF | HRGMv2_0206_13 | HRGMv2_0206_13_46 | 55603 | 56334 | + | GntR |
| TC | HRGMv2_0206_13 | HRGMv2_0206_13_47 | 56348 | 57514 | + | 2.A.1.7.16 |
| CAZyme | HRGMv2_0206_13 | HRGMv2_0206_13_48 | 57605 | 60793 | - | GH92 |
Gene ID: HRGMv2_0206_13_30
Type: TC
Location: 27828 - 29270 (-)
Type: TC
Location: 27828 - 29270 (-)
Gene ID: HRGMv2_0206_13_31
Type: pfam
Location: 29558 - 29770 (+)
Type: pfam
Location: 29558 - 29770 (+)
Gene ID: HRGMv2_0206_13_32
Type: TC
Location: 29767 - 31332 (+)
Type: TC
Location: 29767 - 31332 (+)
Gene ID: HRGMv2_0206_13_33
Type: pfam
Location: 31342 - 32493 (+)
Type: pfam
Location: 31342 - 32493 (+)
Gene ID: HRGMv2_0206_13_34
Type: pfam
Location: 32580 - 33458 (-)
Type: pfam
Location: 32580 - 33458 (-)
Gene ID: HRGMv2_0206_13_35
Type: CAZyme
Location: 33613 - 35964 (-)
Type: CAZyme
Location: 33613 - 35964 (-)
Gene ID: HRGMv2_0206_13_36
Type: CAZyme
Location: 36079 - 39528 (-)
Type: CAZyme
Location: 36079 - 39528 (-)
Gene ID: HRGMv2_0206_13_37
Type: sulfatase
Location: 39567 - 40502 (-)
Type: sulfatase
Location: 39567 - 40502 (-)
Gene ID: HRGMv2_0206_13_38
Type: TC
Location: 40540 - 42213 (-)
Type: TC
Location: 40540 - 42213 (-)
Gene ID: HRGMv2_0206_13_39
Type: TC
Location: 42232 - 45030 (-)
Type: TC
Location: 42232 - 45030 (-)
Gene ID: HRGMv2_0206_13_40
Type:
Location: 45027 - 45263 (-)
Type:
Location: 45027 - 45263 (-)
Gene ID: HRGMv2_0206_13_41
Type: CAZyme
Location: 45533 - 47956 (-)
Type: CAZyme
Location: 45533 - 47956 (-)
Gene ID: HRGMv2_0206_13_42
Type: CAZyme
Location: 48100 - 50397 (+)
Type: CAZyme
Location: 48100 - 50397 (+)
Gene ID: HRGMv2_0206_13_43
Type:
Location: 50587 - 52332 (+)
Type:
Location: 50587 - 52332 (+)
Gene ID: HRGMv2_0206_13_44
Type: sulfatase
Location: 52356 - 53459 (+)
Type: sulfatase
Location: 52356 - 53459 (+)
Gene ID: HRGMv2_0206_13_45
Type: CAZyme
Location: 53517 - 55547 (+)
Type: CAZyme
Location: 53517 - 55547 (+)
Gene ID: HRGMv2_0206_13_46
Type: TF
Location: 55603 - 56334 (+)
Type: TF
Location: 55603 - 56334 (+)
Gene ID: HRGMv2_0206_13_47
Type: TC
Location: 56348 - 57514 (+)
Type: TC
Location: 56348 - 57514 (+)
Gene ID: HRGMv2_0206_13_48
Type: CAZyme
Location: 57605 - 60793 (-)
Type: CAZyme
Location: 57605 - 60793 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0206_13_46 | vegetarian > vegan | 1.03286 | 0.00243 |