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Cluster: HRGMv2_0206_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0206_7 HRGMv2_0206_7_9 11013 12050 - 2.A.1.3.36
TC HRGMv2_0206_7 HRGMv2_0206_7_10 12237 13142 - 3.A.2.1.1
TC HRGMv2_0206_7 HRGMv2_0206_7_11 13149 14729 - 3.A.2.1.3
pfam HRGMv2_0206_7 HRGMv2_0206_7_12 14736 15290 - OSCP
pfam HRGMv2_0206_7 HRGMv2_0206_7_13 15294 15806 - ATP-synt_B | YMF19
TC HRGMv2_0206_7 HRGMv2_0206_7_14 15830 16042 - 3.A.2.1.6
TC HRGMv2_0206_7 HRGMv2_0206_7_15 16089 17300 - 3.A.2.1.7
pfam HRGMv2_0206_7 HRGMv2_0206_7_16 17312 17566 - ATP-synt_DE_N
TC HRGMv2_0206_7 HRGMv2_0206_7_17 17583 19100 - 3.A.2.1.2
TC HRGMv2_0206_7 HRGMv2_0206_7_18 19480 20589 - 3.A.1.105.4
TC HRGMv2_0206_7 HRGMv2_0206_7_19 20592 21695 - 3.A.1.105.15
TC HRGMv2_0206_7 HRGMv2_0206_7_20 21699 22442 - 3.A.1.105.4
TC HRGMv2_0206_7 HRGMv2_0206_7_21 22432 23343 - 3.A.1.105.4
TC HRGMv2_0206_7 HRGMv2_0206_7_22 23343 24236 - 3.A.1.105.4
pfam HRGMv2_0206_7 HRGMv2_0206_7_23 24233 25516 - OEP | OEP
STP HRGMv2_0206_7 HRGMv2_0206_7_24 25519 26142 - TetR_N
CAZyme HRGMv2_0206_7 HRGMv2_0206_7_25 26578 29127 + GH84
TC HRGMv2_0206_7 HRGMv2_0206_7_26 29208 30563 - 2.A.66.1.37
pfam HRGMv2_0206_7 HRGMv2_0206_7_27 30751 31752 - 2-Hacid_dh | 2-Hacid_dh_C
TF HRGMv2_0206_7 HRGMv2_0206_7_28 31800 32645 - HTH_AraC
TC HRGMv2_0206_7 HRGMv2_0206_7_29 32810 34018 + 8.A.1.6.3
TC HRGMv2_0206_7 HRGMv2_0206_7_30 34022 37207 + 2.A.6.2.22
TC HRGMv2_0206_7 HRGMv2_0206_7_31 37211 38581 + 2.A.6.2.20
Gene ID: HRGMv2_0206_7_9
Type: TC
Location: 11013 - 12050 (-)
Gene ID: HRGMv2_0206_7_10
Type: TC
Location: 12237 - 13142 (-)
Gene ID: HRGMv2_0206_7_11
Type: TC
Location: 13149 - 14729 (-)
Gene ID: HRGMv2_0206_7_12
Type: pfam
Location: 14736 - 15290 (-)
Gene ID: HRGMv2_0206_7_13
Type: pfam
Location: 15294 - 15806 (-)
Gene ID: HRGMv2_0206_7_14
Type: TC
Location: 15830 - 16042 (-)
Gene ID: HRGMv2_0206_7_15
Type: TC
Location: 16089 - 17300 (-)
Gene ID: HRGMv2_0206_7_16
Type: pfam
Location: 17312 - 17566 (-)
Gene ID: HRGMv2_0206_7_17
Type: TC
Location: 17583 - 19100 (-)
Gene ID: HRGMv2_0206_7_18
Type: TC
Location: 19480 - 20589 (-)
Gene ID: HRGMv2_0206_7_19
Type: TC
Location: 20592 - 21695 (-)
Gene ID: HRGMv2_0206_7_20
Type: TC
Location: 21699 - 22442 (-)
Gene ID: HRGMv2_0206_7_21
Type: TC
Location: 22432 - 23343 (-)
Gene ID: HRGMv2_0206_7_22
Type: TC
Location: 23343 - 24236 (-)
Gene ID: HRGMv2_0206_7_23
Type: pfam
Location: 24233 - 25516 (-)
Gene ID: HRGMv2_0206_7_24
Type: STP
Location: 25519 - 26142 (-)
Gene ID: HRGMv2_0206_7_25
Type: CAZyme
Location: 26578 - 29127 (+)
Gene ID: HRGMv2_0206_7_26
Type: TC
Location: 29208 - 30563 (-)
Gene ID: HRGMv2_0206_7_27
Type: pfam
Location: 30751 - 31752 (-)
Gene ID: HRGMv2_0206_7_28
Type: TF
Location: 31800 - 32645 (-)
Gene ID: HRGMv2_0206_7_29
Type: TC
Location: 32810 - 34018 (+)
Gene ID: HRGMv2_0206_7_30
Type: TC
Location: 34022 - 37207 (+)
Gene ID: HRGMv2_0206_7_31
Type: TC
Location: 37211 - 38581 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0206_7_17 vegan > omnivore 1.12664 0.01332
HRGMv2_0206_7_20 vegetarian > omnivore 1.02309 0.01287

🧭 Explore Read Mapping of CGC

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