Cluster: HRGMv2_0203_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0203
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0203_50 | HRGMv2_0203_50_5 | 4343 | 6997 | - | GH84 |
| TF | HRGMv2_0203_50 | HRGMv2_0203_50_6 | 7380 | 11360 | + | HTH_AraC |
| TF | HRGMv2_0203_50 | HRGMv2_0203_50_7 | 11360 | 13087 | + | HTH_AraC |
| CAZyme | HRGMv2_0203_50 | HRGMv2_0203_50_8 | 13139 | 15205 | - | GH141 |
| NULL(UNKNOWN) | HRGMv2_0203_50 | HRGMv2_0203_50_9 | 15337 | 16362 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0203_50 | HRGMv2_0203_50_10 | 16406 | 16933 | - | 3.A.3.4.1 |
| TC | HRGMv2_0203_50 | HRGMv2_0203_50_11 | 16893 | 18290 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_0203_50_5
Type: CAZyme
Location: 4343 - 6997 (-)
Type: CAZyme
Location: 4343 - 6997 (-)
Gene ID: HRGMv2_0203_50_6
Type: TF
Location: 7380 - 11360 (+)
Type: TF
Location: 7380 - 11360 (+)
Gene ID: HRGMv2_0203_50_7
Type: TF
Location: 11360 - 13087 (+)
Type: TF
Location: 11360 - 13087 (+)
Gene ID: HRGMv2_0203_50_8
Type: CAZyme
Location: 13139 - 15205 (-)
Type: CAZyme
Location: 13139 - 15205 (-)
Gene ID: HRGMv2_0203_50_9
Type:
Location: 15337 - 16362 (-)
Type:
Location: 15337 - 16362 (-)
Gene ID: HRGMv2_0203_50_10
Type: TC
Location: 16406 - 16933 (-)
Type: TC
Location: 16406 - 16933 (-)
Gene ID: HRGMv2_0203_50_11
Type: TC
Location: 16893 - 18290 (-)
Type: TC
Location: 16893 - 18290 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.