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Cluster: HRGMv2_0203_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0203_2 HRGMv2_0203_2_44 45858 46991 - GT19
pfam HRGMv2_0203_2 HRGMv2_0203_2_45 47014 47784 - SurE
TC HRGMv2_0203_2 HRGMv2_0203_2_46 48056 48823 + 8.A.3.2.3
pfam HRGMv2_0203_2 HRGMv2_0203_2_47 48828 49706 + ParBc | HTH_ParB | ParB_dimer
pfam HRGMv2_0203_2 HRGMv2_0203_2_48 49718 50509 + DUF5683
CAZyme HRGMv2_0203_2 HRGMv2_0203_2_49 50513 51751 + GH23
STP HRGMv2_0203_2 HRGMv2_0203_2_50 51865 54141 + HD
TF HRGMv2_0203_2 HRGMv2_0203_2_51 54138 54485 - MerR
TC HRGMv2_0203_2 HRGMv2_0203_2_52 54503 55471 - 1.A.34.1.3
Gene ID: HRGMv2_0203_2_44
Type: CAZyme
Location: 45858 - 46991 (-)
Gene ID: HRGMv2_0203_2_45
Type: pfam
Location: 47014 - 47784 (-)
Gene ID: HRGMv2_0203_2_46
Type: TC
Location: 48056 - 48823 (+)
Gene ID: HRGMv2_0203_2_47
Type: pfam
Location: 48828 - 49706 (+)
Gene ID: HRGMv2_0203_2_48
Type: pfam
Location: 49718 - 50509 (+)
Gene ID: HRGMv2_0203_2_49
Type: CAZyme
Location: 50513 - 51751 (+)
Gene ID: HRGMv2_0203_2_50
Type: STP
Location: 51865 - 54141 (+)
Gene ID: HRGMv2_0203_2_51
Type: TF
Location: 54138 - 54485 (-)
Gene ID: HRGMv2_0203_2_52
Type: TC
Location: 54503 - 55471 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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