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Cluster: HRGMv2_0190_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0190_3 HRGMv2_0190_3_42 58898 62842 + GH123 | GH3
TF HRGMv2_0190_3 HRGMv2_0190_3_43 62790 64319 - HTH_AraC
STP HRGMv2_0190_3 HRGMv2_0190_3_44 64389 66869 - Reg_prop | Y_Y_Y
CAZyme HRGMv2_0190_3 HRGMv2_0190_3_45 66954 68777 - GH20
pfam HRGMv2_0190_3 HRGMv2_0190_3_46 68791 70380 - SusD_RagB | SusD-like_3
TC HRGMv2_0190_3 HRGMv2_0190_3_47 70401 73388 - 1.B.14.6.2
pfam HRGMv2_0190_3 HRGMv2_0190_3_48 73415 75460 - SusD_RagB | SusD-like_3
TC HRGMv2_0190_3 HRGMv2_0190_3_49 75472 78720 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0190_3 HRGMv2_0190_3_50 78803 80569 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0190_3 HRGMv2_0190_3_51 80884 83112 + GH28
Gene ID: HRGMv2_0190_3_42
Type: CAZyme
Location: 58898 - 62842 (+)
Gene ID: HRGMv2_0190_3_43
Type: TF
Location: 62790 - 64319 (-)
Gene ID: HRGMv2_0190_3_44
Type: STP
Location: 64389 - 66869 (-)
Gene ID: HRGMv2_0190_3_45
Type: CAZyme
Location: 66954 - 68777 (-)
Gene ID: HRGMv2_0190_3_46
Type: pfam
Location: 68791 - 70380 (-)
Gene ID: HRGMv2_0190_3_47
Type: TC
Location: 70401 - 73388 (-)
Gene ID: HRGMv2_0190_3_48
Type: pfam
Location: 73415 - 75460 (-)
Gene ID: HRGMv2_0190_3_49
Type: TC
Location: 75472 - 78720 (-)
Gene ID: HRGMv2_0190_3_50
Type:
Location: 78803 - 80569 (-)
Gene ID: HRGMv2_0190_3_51
Type: CAZyme
Location: 80884 - 83112 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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