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Cluster: HRGMv2_0190_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0190_27 HRGMv2_0190_27_1 541 3792 - GH2
CAZyme HRGMv2_0190_27 HRGMv2_0190_27_2 3984 6272 - CBM32
pfam HRGMv2_0190_27 HRGMv2_0190_27_3 6269 7114 - F5_F8_type_C | F5_F8_type_C_2
pfam HRGMv2_0190_27 HRGMv2_0190_27_4 7142 9043 - SusD_RagB | SusD-like_3
TC HRGMv2_0190_27 HRGMv2_0190_27_5 9052 12240 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0190_27 HRGMv2_0190_27_6 12287 12499 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0190_27 HRGMv2_0190_27_7 13289 13408 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0190_27 HRGMv2_0190_27_8 13604 15607 + GH97
Gene ID: HRGMv2_0190_27_1
Type: CAZyme
Location: 541 - 3792 (-)
Gene ID: HRGMv2_0190_27_2
Type: CAZyme
Location: 3984 - 6272 (-)
Gene ID: HRGMv2_0190_27_3
Type: pfam
Location: 6269 - 7114 (-)
Gene ID: HRGMv2_0190_27_4
Type: pfam
Location: 7142 - 9043 (-)
Gene ID: HRGMv2_0190_27_5
Type: TC
Location: 9052 - 12240 (-)
Gene ID: HRGMv2_0190_27_6
Type:
Location: 12287 - 12499 (-)
Gene ID: HRGMv2_0190_27_7
Type:
Location: 13289 - 13408 (+)
Gene ID: HRGMv2_0190_27_8
Type: CAZyme
Location: 13604 - 15607 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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