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Cluster: HRGMv2_0190_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0190_23 HRGMv2_0190_23_21 20915 21658 + 3.A.1.105.15
TC HRGMv2_0190_23 HRGMv2_0190_23_22 21660 22766 + 3.A.1.105.15
TC HRGMv2_0190_23 HRGMv2_0190_23_23 22771 23889 + 3.A.1.105.16
CAZyme HRGMv2_0190_23 HRGMv2_0190_23_24 23899 24645 + GT2
TC HRGMv2_0190_23 HRGMv2_0190_23_25 24657 25331 + 2.A.123.4.1
CAZyme HRGMv2_0190_23 HRGMv2_0190_23_26 25297 27021 + GT83
pfam HRGMv2_0190_23 HRGMv2_0190_23_27 27463 28485 + PDDEXK_2
NULL(UNKNOWN) HRGMv2_0190_23 HRGMv2_0190_23_28 28525 28653 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0190_23 HRGMv2_0190_23_29 28871 30181 + GT83
Gene ID: HRGMv2_0190_23_21
Type: TC
Location: 20915 - 21658 (+)
Gene ID: HRGMv2_0190_23_22
Type: TC
Location: 21660 - 22766 (+)
Gene ID: HRGMv2_0190_23_23
Type: TC
Location: 22771 - 23889 (+)
Gene ID: HRGMv2_0190_23_24
Type: CAZyme
Location: 23899 - 24645 (+)
Gene ID: HRGMv2_0190_23_25
Type: TC
Location: 24657 - 25331 (+)
Gene ID: HRGMv2_0190_23_26
Type: CAZyme
Location: 25297 - 27021 (+)
Gene ID: HRGMv2_0190_23_27
Type: pfam
Location: 27463 - 28485 (+)
Gene ID: HRGMv2_0190_23_28
Type:
Location: 28525 - 28653 (+)
Gene ID: HRGMv2_0190_23_29
Type: CAZyme
Location: 28871 - 30181 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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