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Cluster: HRGMv2_0190_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0190_20 HRGMv2_0190_20_1 161 1594 + 2.A.1.14.2
peptidase HRGMv2_0190_20 HRGMv2_0190_20_2 1782 3848 - S09.UPA
NULL(UNKNOWN) HRGMv2_0190_20 HRGMv2_0190_20_3 3848 4249 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0190_20 HRGMv2_0190_20_4 4256 5398 - CE2
pfam HRGMv2_0190_20 HRGMv2_0190_20_5 5861 6112 - Ribosomal_L31
CAZyme HRGMv2_0190_20 HRGMv2_0190_20_6 6218 9472 - GH2
pfam HRGMv2_0190_20 HRGMv2_0190_20_7 9482 11338 - Metallophos | PQQ | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
NULL(UNKNOWN) HRGMv2_0190_20 HRGMv2_0190_20_8 12064 12672 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0190_20 HRGMv2_0190_20_9 14206 15360 - GT1
pfam HRGMv2_0190_20 HRGMv2_0190_20_10 15382 16479 - NTP_transferase
pfam HRGMv2_0190_20 HRGMv2_0190_20_11 16705 17688 - polyprenyl_synt
TC HRGMv2_0190_20 HRGMv2_0190_20_12 17845 18561 + 2.A.88.8.1
Gene ID: HRGMv2_0190_20_1
Type: TC
Location: 161 - 1594 (+)
Gene ID: HRGMv2_0190_20_2
Type: peptidase
Location: 1782 - 3848 (-)
Gene ID: HRGMv2_0190_20_3
Type:
Location: 3848 - 4249 (-)
Gene ID: HRGMv2_0190_20_4
Type: CAZyme
Location: 4256 - 5398 (-)
Gene ID: HRGMv2_0190_20_5
Type: pfam
Location: 5861 - 6112 (-)
Gene ID: HRGMv2_0190_20_6
Type: CAZyme
Location: 6218 - 9472 (-)
Gene ID: HRGMv2_0190_20_7
Type: pfam
Location: 9482 - 11338 (-)
Gene ID: HRGMv2_0190_20_8
Type:
Location: 12064 - 12672 (-)
Gene ID: HRGMv2_0190_20_9
Type: CAZyme
Location: 14206 - 15360 (-)
Gene ID: HRGMv2_0190_20_10
Type: pfam
Location: 15382 - 16479 (-)
Gene ID: HRGMv2_0190_20_11
Type: pfam
Location: 16705 - 17688 (-)
Gene ID: HRGMv2_0190_20_12
Type: TC
Location: 17845 - 18561 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0190_20_5 vegetarian > vegan 1.41780 0.01316

🧭 Explore Read Mapping of CGC

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