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Cluster: HRGMv2_0188_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0188_4 HRGMv2_0188_4_33 49778 50875 + GH105
pfam HRGMv2_0188_4 HRGMv2_0188_4_34 50888 51730 + KduI
pfam HRGMv2_0188_4 HRGMv2_0188_4_35 51837 54017 - Gln-synt_C | GSIII_N | Gln-synt_C-ter
TC HRGMv2_0188_4 HRGMv2_0188_4_36 54558 57704 + 1.B.14.6.13
TC HRGMv2_0188_4 HRGMv2_0188_4_37 57719 59389 + 8.A.46.2.1
NULL(UNKNOWN) HRGMv2_0188_4 HRGMv2_0188_4_38 59787 61133 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0188_4 HRGMv2_0188_4_39 61176 64415 + 1.B.14.6.1
pfam HRGMv2_0188_4 HRGMv2_0188_4_40 64433 66358 + SusD_RagB | SusD-like_3
pfam HRGMv2_0188_4 HRGMv2_0188_4_41 66417 67652 + DUF4959 | DUF5000 | DUF5126
CAZyme HRGMv2_0188_4 HRGMv2_0188_4_42 67676 68872 + CBM32
Gene ID: HRGMv2_0188_4_33
Type: CAZyme
Location: 49778 - 50875 (+)
Gene ID: HRGMv2_0188_4_34
Type: pfam
Location: 50888 - 51730 (+)
Gene ID: HRGMv2_0188_4_35
Type: pfam
Location: 51837 - 54017 (-)
Gene ID: HRGMv2_0188_4_36
Type: TC
Location: 54558 - 57704 (+)
Gene ID: HRGMv2_0188_4_37
Type: TC
Location: 57719 - 59389 (+)
Gene ID: HRGMv2_0188_4_38
Type:
Location: 59787 - 61133 (+)
Gene ID: HRGMv2_0188_4_39
Type: TC
Location: 61176 - 64415 (+)
Gene ID: HRGMv2_0188_4_40
Type: pfam
Location: 64433 - 66358 (+)
Gene ID: HRGMv2_0188_4_41
Type: pfam
Location: 66417 - 67652 (+)
Gene ID: HRGMv2_0188_4_42
Type: CAZyme
Location: 67676 - 68872 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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