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Cluster: HRGMv2_0188_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0188_4 HRGMv2_0188_4_21 27191 30058 - 1.B.14.6.1
pfam HRGMv2_0188_4 HRGMv2_0188_4_22 30071 31927 - SusD_RagB | SusD-like_3
TC HRGMv2_0188_4 HRGMv2_0188_4_23 31942 35121 - 1.B.14.6.1
pfam HRGMv2_0188_4 HRGMv2_0188_4_24 35133 36710 - BACON | BACON | BACON | BACON_2 | BACON_2
pfam HRGMv2_0188_4 HRGMv2_0188_4_25 36774 37373 - DUF4998
CAZyme HRGMv2_0188_4 HRGMv2_0188_4_26 37381 38880 - PL42
TF HRGMv2_0188_4 HRGMv2_0188_4_27 38994 42986 - HTH_AraC | HTH_AraC
TF HRGMv2_0188_4 HRGMv2_0188_4_28 43111 44193 - LacI
CAZyme HRGMv2_0188_4 HRGMv2_0188_4_29 44337 46226 + PL35
Gene ID: HRGMv2_0188_4_21
Type: TC
Location: 27191 - 30058 (-)
Gene ID: HRGMv2_0188_4_22
Type: pfam
Location: 30071 - 31927 (-)
Gene ID: HRGMv2_0188_4_23
Type: TC
Location: 31942 - 35121 (-)
Gene ID: HRGMv2_0188_4_24
Type: pfam
Location: 35133 - 36710 (-)
Gene ID: HRGMv2_0188_4_25
Type: pfam
Location: 36774 - 37373 (-)
Gene ID: HRGMv2_0188_4_26
Type: CAZyme
Location: 37381 - 38880 (-)
Gene ID: HRGMv2_0188_4_27
Type: TF
Location: 38994 - 42986 (-)
Gene ID: HRGMv2_0188_4_28
Type: TF
Location: 43111 - 44193 (-)
Gene ID: HRGMv2_0188_4_29
Type: CAZyme
Location: 44337 - 46226 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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